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BioProject
KAP241890
BioProject Title
Distinct regulation of AEBP2 isoforms on PRC2 activity
Common Fields
Common Fields - BioProject, Strategy, Source, Selection, Layout, Instrument, Submission date, Experiments
BioProject
 KAP241890
Strategy
RNA-Seq , ChIP-Seq
Source
TRANSCRIPTOMIC , GENOMIC
Selection
 cDNA , ChIP
Layout
paired
Instrument
Illumina NovaSeq X Plus
Submission date
 2025-11-21
Experiments
 32
Accession
Accession - RUNs, BIOSAMPLEs
Runs
 All runs [32]
BioSamples
 All samples [32]
Experiment Metadata
(32 cases)
Experiment Metadata - SUBMISSION ID, EXPERIMENT ID, Identifier, BIOSAMPLE ID, SAMPLE NAME, LIBRARY IDENTIFIER, TITLE, LIBRARY STRATEGY, LIBRARY SOURCE, LIBRARY SELETION, LIBRARY IAYOUT, FLATFORM, INSTRUMENT MODEL
EXPERIMENT ID
Identifier
BIOSAMPLE ID
sample_name
library_name
title library_strategy library_source library_selection library_layout platform instrument_model design_description library_construction_protocol library_strandedness insert_size Submission dateSubmission date Registration date
KAE24107746 KAS24174078 E14_TKO_AEBP2_Short_rescue_Day4_RNA_rep2 E14_TKO_AEBP2_Short_rescue_Day4_RNA_rep2_RNA-Seq Illumina NovaSeq X Plus paired Sequencing of E14_TKO_AEBP2_Short_rescue_Day4_RNA_rep2 RNA-Seq TRANSCRIPTOMIC cDNA paired ILLUMINA Illumina NovaSeq X Plus RNA-seq libraries were constructed using the NEBNext Ultra II Directional RNA Library Prep Kit following the manufacturer&'s protocol. 2025-11-21 2025-11-21
KAE24107745 KAS24174079 E14_TKO_AEBP2_Short_rescue_Day4_RNA_rep1 E14_TKO_AEBP2_Short_rescue_Day4_RNA_rep1_RNA-Seq Illumina NovaSeq X Plus paired Sequencing of E14_TKO_AEBP2_Short_rescue_Day4_RNA_rep1 RNA-Seq TRANSCRIPTOMIC cDNA paired ILLUMINA Illumina NovaSeq X Plus RNA-seq libraries were constructed using the NEBNext Ultra II Directional RNA Library Prep Kit following the manufacturer&'s protocol. 2025-11-21 2025-11-21
KAE24107744 KAS24174086 E14_TKO_AEBP2_Long_rescue_Day4_RNA_rep2 E14_TKO_AEBP2_Long_rescue_Day4_RNA_rep2_RNA-Seq Illumina NovaSeq X Plus paired Sequencing of E14_TKO_AEBP2_Long_rescue_Day4_RNA_rep2 RNA-Seq TRANSCRIPTOMIC cDNA paired ILLUMINA Illumina NovaSeq X Plus RNA-seq libraries were constructed using the NEBNext Ultra II Directional RNA Library Prep Kit following the manufacturer&'s protocol. 2025-11-21 2025-11-21
KAE24107743 KAS24174087 E14_TKO_AEBP2_Long_rescue_Day4_RNA_rep1 E14_TKO_AEBP2_Long_rescue_Day4_RNA_rep1_RNA-Seq Illumina NovaSeq X Plus paired Sequencing of E14_TKO_AEBP2_Long_rescue_Day4_RNA_rep1 RNA-Seq TRANSCRIPTOMIC cDNA paired ILLUMINA Illumina NovaSeq X Plus RNA-seq libraries were constructed using the NEBNext Ultra II Directional RNA Library Prep Kit following the manufacturer&'s protocol. 2025-11-21 2025-11-21
KAE24107742 KAS24174070 E14_TKO_Day4_RNA_rep2 E14_TKO_Day4_RNA_rep2_RNA-Seq Illumina NovaSeq X Plus paired Sequencing of E14_TKO_Day4_RNA_rep2 RNA-Seq TRANSCRIPTOMIC cDNA paired ILLUMINA Illumina NovaSeq X Plus RNA-seq libraries were constructed using the NEBNext Ultra II Directional RNA Library Prep Kit following the manufacturer&'s protocol. 2025-11-21 2025-11-21
KAE24107741 KAS24174071 E14_TKO_Day4_RNA_rep1 E14_TKO_Day4_RNA_rep1_RNA-Seq Illumina NovaSeq X Plus paired Sequencing of E14_TKO_Day4_RNA_rep1 RNA-Seq TRANSCRIPTOMIC cDNA paired ILLUMINA Illumina NovaSeq X Plus RNA-seq libraries were constructed using the NEBNext Ultra II Directional RNA Library Prep Kit following the manufacturer&'s protocol. 2025-11-21 2025-11-21
KAE24107740 KAS24174062 E14_WT_Day4_RNA_rep2 E14_WT_Day4_RNA_rep2_RNA-Seq Illumina NovaSeq X Plus paired Sequencing of E14_WT_Day4_RNA_rep2 RNA-Seq TRANSCRIPTOMIC cDNA paired ILLUMINA Illumina NovaSeq X Plus RNA-seq libraries were constructed using the NEBNext Ultra II Directional RNA Library Prep Kit following the manufacturer&'s protocol. 2025-11-21 2025-11-21
KAE24107739 KAS24174063 E14_WT_Day4_RNA_rep1 E14_WT_Day4_RNA_rep1_RNA-Seq Illumina NovaSeq X Plus paired Sequencing of E14_WT_Day4_RNA_rep1 RNA-Seq TRANSCRIPTOMIC cDNA paired ILLUMINA Illumina NovaSeq X Plus RNA-seq libraries were constructed using the NEBNext Ultra II Directional RNA Library Prep Kit following the manufacturer&'s protocol. 2025-11-21 2025-11-21
KAE24107738 KAS24174080 E14_TKO_AEBP2_Short_rescue_Day0_RNA_rep2 E14_TKO_AEBP2_Short_rescue_Day0_RNA_rep2_RNA-Seq Illumina NovaSeq X Plus paired Sequencing of E14_TKO_AEBP2_Short_rescue_Day0_RNA_rep2 RNA-Seq TRANSCRIPTOMIC cDNA paired ILLUMINA Illumina NovaSeq X Plus RNA-seq libraries were constructed using the NEBNext Ultra II Directional RNA Library Prep Kit following the manufacturer&'s protocol. 2025-11-21 2025-11-21
KAE24107737 KAS24174081 E14_TKO_AEBP2_Short_rescue_Day0_RNA_rep1 E14_TKO_AEBP2_Short_rescue_Day0_RNA_rep1_RNA-Seq Illumina NovaSeq X Plus paired Sequencing of E14_TKO_AEBP2_Short_rescue_Day0_RNA_rep1 RNA-Seq TRANSCRIPTOMIC cDNA paired ILLUMINA Illumina NovaSeq X Plus RNA-seq libraries were constructed using the NEBNext Ultra II Directional RNA Library Prep Kit following the manufacturer&'s protocol. 2025-11-21 2025-11-21
KAE24107736 KAS24174088 E14_TKO_AEBP2_Long_rescue_Day0_RNA_rep2 E14_TKO_AEBP2_Long_rescue_Day0_RNA_rep2_RNA-Seq Illumina NovaSeq X Plus paired Sequencing of E14_TKO_AEBP2_Long_rescue_Day0_RNA_rep2 RNA-Seq TRANSCRIPTOMIC cDNA paired ILLUMINA Illumina NovaSeq X Plus RNA-seq libraries were constructed using the NEBNext Ultra II Directional RNA Library Prep Kit following the manufacturer&'s protocol. 2025-11-21 2025-11-21
KAE24107735 KAS24174089 E14_TKO_AEBP2_Long_rescue_Day0_RNA_rep1 E14_TKO_AEBP2_Long_rescue_Day0_RNA_rep1_RNA-Seq Illumina NovaSeq X Plus paired Sequencing of E14_TKO_AEBP2_Long_rescue_Day0_RNA_rep1 RNA-Seq TRANSCRIPTOMIC cDNA paired ILLUMINA Illumina NovaSeq X Plus RNA-seq libraries were constructed using the NEBNext Ultra II Directional RNA Library Prep Kit following the manufacturer&'s protocol. 2025-11-21 2025-11-21
KAE24107734 KAS24174072 E14_TKO_Day0_RNA_rep2 E14_TKO_Day0_RNA_rep2_RNA-Seq Illumina NovaSeq X Plus paired Sequencing of E14_TKO_Day0_RNA_rep2 RNA-Seq TRANSCRIPTOMIC cDNA paired ILLUMINA Illumina NovaSeq X Plus RNA-seq libraries were constructed using the NEBNext Ultra II Directional RNA Library Prep Kit following the manufacturer&'s protocol. 2025-11-21 2025-11-21
KAE24107733 KAS24174073 E14_TKO_Day0_RNA_rep1 E14_TKO_Day0_RNA_rep1_RNA-Seq Illumina NovaSeq X Plus paired Sequencing of E14_TKO_Day0_RNA_rep1 RNA-Seq TRANSCRIPTOMIC cDNA paired ILLUMINA Illumina NovaSeq X Plus RNA-seq libraries were constructed using the NEBNext Ultra II Directional RNA Library Prep Kit following the manufacturer&'s protocol. 2025-11-21 2025-11-21
KAE24107732 KAS24174064 E14_WT_Day0_RNA_rep2 E14_WT_Day0_RNA_rep2_RNA-Seq Illumina NovaSeq X Plus paired Sequencing of E14_WT_Day0_RNA_rep2 RNA-Seq TRANSCRIPTOMIC cDNA paired ILLUMINA Illumina NovaSeq X Plus RNA-seq libraries were constructed using the NEBNext Ultra II Directional RNA Library Prep Kit following the manufacturer&'s protocol. 2025-11-21 2025-11-21
KAE24107731 KAS24174065 E14_WT_Day0_RNA_rep1 E14_WT_Day0_RNA_rep1_RNA-Seq Illumina NovaSeq X Plus paired Sequencing of E14_WT_Day0_RNA_rep1 RNA-Seq TRANSCRIPTOMIC cDNA paired ILLUMINA Illumina NovaSeq X Plus RNA-seq libraries were constructed using the NEBNext Ultra II Directional RNA Library Prep Kit following the manufacturer&'s protocol. 2025-11-21 2025-11-21
KAE24107730 KAS24174084 E14_TKO_AEBP2_Short_rescue_ChIP_AEBP2_rep2 E14_TKO_AEBP2_Short_rescue_ChIP_AEBP2_rep2_ChIP-Seq Illumina NovaSeq X Plus paired Sequencing of E14_TKO_AEBP2_Short_rescue_ChIP_AEBP2_rep2 ChIP-Seq GENOMIC ChIP paired ILLUMINA Illumina NovaSeq X Plus ChIP-seq libraries were prepared using NEBNext Ultra II DNA Library Prep Kit for Illumina following the manufacturer&'s instructions 2025-11-21 2025-11-21
KAE24107729 KAS24174085 E14_TKO_AEBP2_Short_rescue_ChIP_AEBP2_rep1 E14_TKO_AEBP2_Short_rescue_ChIP_AEBP2_rep1_ChIP-Seq Illumina NovaSeq X Plus paired Sequencing of E14_TKO_AEBP2_Short_rescue_ChIP_AEBP2_rep1 ChIP-Seq GENOMIC ChIP paired ILLUMINA Illumina NovaSeq X Plus ChIP-seq libraries were prepared using NEBNext Ultra II DNA Library Prep Kit for Illumina following the manufacturer&'s instructions 2025-11-21 2025-11-21
KAE24107728 KAS24174092 E14_TKO_AEBP2_Long_rescue_ChIP_AEBP2_rep2 E14_TKO_AEBP2_Long_rescue_ChIP_AEBP2_rep2_ChIP-Seq Illumina NovaSeq X Plus paired Sequencing of E14_TKO_AEBP2_Long_rescue_ChIP_AEBP2_rep2 ChIP-Seq GENOMIC ChIP paired ILLUMINA Illumina NovaSeq X Plus ChIP-seq libraries were prepared using NEBNext Ultra II DNA Library Prep Kit for Illumina following the manufacturer&'s instructions 2025-11-21 2025-11-21
KAE24107727 KAS24174093 E14_TKO_AEBP2_Long_rescue_ChIP_AEBP2_rep1 E14_TKO_AEBP2_Long_rescue_ChIP_AEBP2_rep1_ChIP-Seq Illumina NovaSeq X Plus paired Sequencing of E14_TKO_AEBP2_Long_rescue_ChIP_AEBP2_rep1 ChIP-Seq GENOMIC ChIP paired ILLUMINA Illumina NovaSeq X Plus ChIP-seq libraries were prepared using NEBNext Ultra II DNA Library Prep Kit for Illumina following the manufacturer&'s instructions 2025-11-21 2025-11-21
KAE24107726 KAS24174076 E14_TKO_ChIP_AEBP2_rep2 E14_TKO_ChIP_AEBP2_rep2_ChIP-Seq Illumina NovaSeq X Plus paired Sequencing of E14_TKO_ChIP_AEBP2_rep2 ChIP-Seq GENOMIC ChIP paired ILLUMINA Illumina NovaSeq X Plus ChIP-seq libraries were prepared using NEBNext Ultra II DNA Library Prep Kit for Illumina following the manufacturer&'s instructions 2025-11-21 2025-11-21
KAE24107725 KAS24174077 E14_TKO_ChIP_AEBP2_rep1 E14_TKO_ChIP_AEBP2_rep1_ChIP-Seq Illumina NovaSeq X Plus paired Sequencing of E14_TKO_ChIP_AEBP2_rep1 ChIP-Seq GENOMIC ChIP paired ILLUMINA Illumina NovaSeq X Plus ChIP-seq libraries were prepared using NEBNext Ultra II DNA Library Prep Kit for Illumina following the manufacturer&'s instructions 2025-11-21 2025-11-21
KAE24107724 KAS24174068 E14_WT_ChIP_AEBP2_rep2 E14_WT_ChIP_AEBP2_rep2_ChIP-Seq Illumina NovaSeq X Plus paired Sequencing of E14_WT_ChIP_AEBP2_rep2 ChIP-Seq GENOMIC ChIP paired ILLUMINA Illumina NovaSeq X Plus ChIP-seq libraries were prepared using NEBNext Ultra II DNA Library Prep Kit for Illumina following the manufacturer&'s instructions 2025-11-21 2025-11-21
KAE24107723 KAS24174069 E14_WT_ChIP_AEBP2_rep1 E14_WT_ChIP_AEBP2_rep1_ChIP-Seq Illumina NovaSeq X Plus paired Sequencing of E14_WT_ChIP_AEBP2_rep1 ChIP-Seq GENOMIC ChIP paired ILLUMINA Illumina NovaSeq X Plus ChIP-seq libraries were prepared using NEBNext Ultra II DNA Library Prep Kit for Illumina following the manufacturer&'s instructions 2025-11-21 2025-11-21
KAE24107722 KAS24174082 E14_TKO_AEBP2_Short_rescue_CUTnTag_H3K27me3_rep2 E14_TKO_AEBP2_Short_rescue_CUTnTag_H3K27me3_rep2_ChIP-Seq Illumina NovaSeq X Plus paired Sequencing of E14_TKO_AEBP2_Short_rescue_CUTnTag_H3K27me3_rep2 ChIP-Seq GENOMIC ChIP paired ILLUMINA Illumina NovaSeq X Plus CUTnTag libraries were prepared using the CUTANA CUTnTag Library Preparation Kit (EpiCypher) following the manufacturer&'s protocol 2025-11-21 2025-11-21
KAE24107721 KAS24174083 E14_TKO_AEBP2_Short_rescue_CUTnTag_H3K27me3_rep1 E14_TKO_AEBP2_Short_rescue_CUTnTag_H3K27me3_rep1_ChIP-Seq Illumina NovaSeq X Plus paired Sequencing of E14_TKO_AEBP2_Short_rescue_CUTnTag_H3K27me3_rep1 ChIP-Seq GENOMIC ChIP paired ILLUMINA Illumina NovaSeq X Plus CUTnTag libraries were prepared using the CUTANA CUTnTag Library Preparation Kit (EpiCypher) following the manufacturer&'s protocol 2025-11-21 2025-11-21
KAE24107720 KAS24174090 E14_TKO_AEBP2_Long_rescue_CUTnTag_H3K27me3_rep2 E14_TKO_AEBP2_Long_rescue_CUTnTag_H3K27me3_rep2_ChIP-Seq Illumina NovaSeq X Plus paired Sequencing of E14_TKO_AEBP2_Long_rescue_CUTnTag_H3K27me3_rep2 ChIP-Seq GENOMIC ChIP paired ILLUMINA Illumina NovaSeq X Plus CUTnTag libraries were prepared using the CUTANA CUTnTag Library Preparation Kit (EpiCypher) following the manufacturer&'s protocol 2025-11-21 2025-11-21
KAE24107719 KAS24174091 E14_TKO_AEBP2_Long_rescue_CUTnTag_H3K27me3_rep1 E14_TKO_AEBP2_Long_rescue_CUTnTag_H3K27me3_rep1_ChIP-Seq Illumina NovaSeq X Plus paired Sequencing of E14_TKO_AEBP2_Long_rescue_CUTnTag_H3K27me3_rep1 ChIP-Seq GENOMIC ChIP paired ILLUMINA Illumina NovaSeq X Plus CUTnTag libraries were prepared using the CUTANA CUTnTag Library Preparation Kit (EpiCypher) following the manufacturer&'s protocol 2025-11-21 2025-11-21
KAE24107718 KAS24174074 E14_TKO_CUTnTag_H3K27me3_rep2 E14_TKO_CUTnTag_H3K27me3_rep2_ChIP-Seq Illumina NovaSeq X Plus paired Sequencing of E14_TKO_CUTnTag_H3K27me3_rep2 ChIP-Seq GENOMIC ChIP paired ILLUMINA Illumina NovaSeq X Plus CUTnTag libraries were prepared using the CUTANA CUTnTag Library Preparation Kit (EpiCypher) following the manufacturer&'s protocol 2025-11-21 2025-11-21
KAE24107717 KAS24174075 E14_TKO_CUTnTag_H3K27me3_rep1 E14_TKO_CUTnTag_H3K27me3_rep1_ChIP-Seq Illumina NovaSeq X Plus paired Sequencing of E14_TKO_CUTnTag_H3K27me3_rep1 ChIP-Seq GENOMIC ChIP paired ILLUMINA Illumina NovaSeq X Plus CUTnTag libraries were prepared using the CUTANA CUTnTag Library Preparation Kit (EpiCypher) following the manufacturer&'s protocol 2025-11-21 2025-11-21
KAE24107716 KAS24174066 E14_WT_CUTnTag_H3K27me3_rep2 E14_WT_CUTnTag_H3K27me3_rep2_ChIP-Seq Illumina NovaSeq X Plus paired Sequencing of E14_WT_CUTnTag_H3K27me3_rep2 ChIP-Seq GENOMIC ChIP paired ILLUMINA Illumina NovaSeq X Plus CUTnTag libraries were prepared using the CUTANA CUTnTag Library Preparation Kit (EpiCypher) following the manufacturer&'s protocol 2025-11-21 2025-11-21
KAE24107715 KAS24174067 E14_WT_CUTnTag_H3K27me3_rep1 E14_WT_CUTnTag_H3K27me3_rep1_ChIP-Seq Illumina NovaSeq X Plus paired Sequencing of E14_WT_CUTnTag_H3K27me3_rep1 ChIP-Seq GENOMIC ChIP paired ILLUMINA Illumina NovaSeq X Plus CUTnTag libraries were prepared using the CUTANA CUTnTag Library Preparation Kit (EpiCypher) following the manufacturer&'s protocol 2025-11-21 2025-11-21