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BioProject

KAP241890

BioProject Title

Distinct regulation of AEBP2 isoforms on PRC2 activity

This project aims to analyze the functional differences between long and short isoforms of AEBP2 in regulating PRC2 activity in mouse embryonic stem cells. CUT&Tag, ChIP-seq and RNA-seq datasets were generated from WT, triple knockout (Aebp2-/-, Mtf2-/-, Jarid2-/-), and isoform-rescue cell lines under Day0 and Day4 conditions.

Common Fields

Common Fields - BioProject, Data Type, Submission date, Access, Release date, Runs
BioProject	KAP241890
Data Type	fastq
Submission date	2025-11-21
Access	Public
Release date	2025-11-21
Runs	32

Accession

Accession - Division, BIOSAMPLEs
Division	Run	Bytes	Download
Total	32	93,541,087,590 93,541,087,590	Metadata

BioProject * All samples * All experiments

Run Metadata

Primary

(32 cases)

Run Metadata - RUN ID, EXPERIMENT ID, BIOSAMPLE ID, LIBRARY IDENTIFIER, TYPE OF PRIMARY DATA FILE, NAME OF PRIMARY DATA FILE
Run ID	Experiment ID	BioSample ID	library name	filetype	file name	bytes (total)	Registration date	Release date	Access type	Protocol
KAR24107715	KAE24107715	KAS24174067	E14_WT_CUTnTag_H3K27me3_rep1_ChIP-Seq	fastq	E14_WT_CUTnTag_H3K27me3_rep1_R1.fastq.gz \| E14_WT_CUTnTag_H3K27me3_rep1_R2.fastq.gz	412,815,455 412,815,455	2025-11-21	2025-11-21	PUBLIC	Protocol
KAR24107716	KAE24107716	KAS24174066	E14_WT_CUTnTag_H3K27me3_rep2_ChIP-Seq	fastq	E14_WT_CUTnTag_H3K27me3_rep2_R1.fastq.gz \| E14_WT_CUTnTag_H3K27me3_rep2_R2.fastq.gz	483,655,658 483,655,658	2025-11-21	2025-11-21	PUBLIC	Protocol
KAR24107717	KAE24107717	KAS24174075	E14_TKO_CUTnTag_H3K27me3_rep1_ChIP-Seq	fastq	E14_TKO_CUTnTag_H3K27me3_rep1_R1.fastq.gz \| E14_TKO_CUTnTag_H3K27me3_rep1_R2.fastq.gz	249,305,529 249,305,529	2025-11-21	2025-11-21	PUBLIC	Protocol
KAR24107718	KAE24107718	KAS24174074	E14_TKO_CUTnTag_H3K27me3_rep2_ChIP-Seq	fastq	E14_TKO_CUTnTag_H3K27me3_rep2_R1.fastq.gz \| E14_TKO_CUTnTag_H3K27me3_rep2_R2.fastq.gz	363,105,181 363,105,181	2025-11-21	2025-11-21	PUBLIC	Protocol
KAR24107719	KAE24107719	KAS24174091	E14_TKO_AEBP2_Long_rescue_CUTnTag_H3K27me3_rep1_ChIP-Seq	fastq	E14_TKO_AEBP2_Long_rescue_CUTnTag_H3K27me3_rep1_R1.fastq.gz \| E14_TKO_AEBP2_Long_rescue_CUTnTag_H3K27me3_rep1_R2.fastq.gz	468,905,149 468,905,149	2025-11-21	2025-11-21	PUBLIC	Protocol
KAR24107720	KAE24107720	KAS24174090	E14_TKO_AEBP2_Long_rescue_CUTnTag_H3K27me3_rep2_ChIP-Seq	fastq	E14_TKO_AEBP2_Long_rescue_CUTnTag_H3K27me3_rep2_R1.fastq.gz \| E14_TKO_AEBP2_Long_rescue_CUTnTag_H3K27me3_rep2_R2.fastq.gz	380,397,740 380,397,740	2025-11-21	2025-11-21	PUBLIC	Protocol
KAR24107721	KAE24107721	KAS24174083	E14_TKO_AEBP2_Short_rescue_CUTnTag_H3K27me3_rep1_ChIP-Seq	fastq	E14_TKO_AEBP2_Short_rescue_CUTnTag_H3K27me3_rep1_R1.fastq.gz \| E14_TKO_AEBP2_Short_rescue_CUTnTag_H3K27me3_rep1_R2.fastq.gz	319,951,566 319,951,566	2025-11-21	2025-11-21	PUBLIC	Protocol
KAR24107722	KAE24107722	KAS24174082	E14_TKO_AEBP2_Short_rescue_CUTnTag_H3K27me3_rep2_ChIP-Seq	fastq	E14_TKO_AEBP2_Short_rescue_CUTnTag_H3K27me3_rep2_R1.fastq.gz \| E14_TKO_AEBP2_Short_rescue_CUTnTag_H3K27me3_rep2_R2.fastq.gz	394,145,871 394,145,871	2025-11-21	2025-11-21	PUBLIC	Protocol
KAR24107723	KAE24107723	KAS24174069	E14_WT_ChIP_AEBP2_rep1_ChIP-Seq	fastq	E14_WT_ChIP_AEBP2_rep1_R2.fastq.gz \| E14_WT_ChIP_AEBP2_rep1_R1.fastq.gz	1,169,773,532 1,169,773,532	2025-11-21	2025-11-21	PUBLIC	Protocol
KAR24107724	KAE24107724	KAS24174068	E14_WT_ChIP_AEBP2_rep2_ChIP-Seq	fastq	E14_WT_ChIP_AEBP2_rep2_R1.fastq.gz \| E14_WT_ChIP_AEBP2_rep2_R2.fastq.gz	1,203,765,665 1,203,765,665	2025-11-21	2025-11-21	PUBLIC	Protocol
KAR24107725	KAE24107725	KAS24174077	E14_TKO_ChIP_AEBP2_rep1_ChIP-Seq	fastq	E14_TKO_ChIP_AEBP2_rep1_R1.fastq.gz \| E14_TKO_ChIP_AEBP2_rep1_R2.fastq.gz	1,491,624,313 1,491,624,313	2025-11-21	2025-11-21	PUBLIC	Protocol
KAR24107726	KAE24107726	KAS24174076	E14_TKO_ChIP_AEBP2_rep2_ChIP-Seq	fastq	E14_TKO_ChIP_AEBP2_rep2_R1.fastq.gz \| E14_TKO_ChIP_AEBP2_rep2_R2.fastq.gz	1,426,530,337 1,426,530,337	2025-11-21	2025-11-21	PUBLIC	Protocol
KAR24107727	KAE24107727	KAS24174093	E14_TKO_AEBP2_Long_rescue_ChIP_AEBP2_rep1_ChIP-Seq	fastq	E14_TKO_AEBP2_Long_rescue_ChIP_AEBP2_rep1_R1.fastq.gz \| E14_TKO_AEBP2_Long_rescue_ChIP_AEBP2_rep1_R2.fastq.gz	1,726,115,923 1,726,115,923	2025-11-21	2025-11-21	PUBLIC	Protocol
KAR24107728	KAE24107728	KAS24174092	E14_TKO_AEBP2_Long_rescue_ChIP_AEBP2_rep2_ChIP-Seq	fastq	E14_TKO_AEBP2_Long_rescue_ChIP_AEBP2_rep2_R1.fastq.gz \| E14_TKO_AEBP2_Long_rescue_ChIP_AEBP2_rep2_R2.fastq.gz	1,466,147,485 1,466,147,485	2025-11-21	2025-11-21	PUBLIC	Protocol
KAR24107729	KAE24107729	KAS24174085	E14_TKO_AEBP2_Short_rescue_ChIP_AEBP2_rep1_ChIP-Seq	fastq	E14_TKO_AEBP2_Short_rescue_ChIP_AEBP2_rep1_R1.fastq.gz \| E14_TKO_AEBP2_Short_rescue_ChIP_AEBP2_rep1_R2.fastq.gz	1,221,473,038 1,221,473,038	2025-11-21	2025-11-21	PUBLIC	Protocol
KAR24107730	KAE24107730	KAS24174084	E14_TKO_AEBP2_Short_rescue_ChIP_AEBP2_rep2_ChIP-Seq	fastq	E14_TKO_AEBP2_Short_rescue_ChIP_AEBP2_rep2_R1.fastq.gz \| E14_TKO_AEBP2_Short_rescue_ChIP_AEBP2_rep2_R2.fastq.gz	1,038,829,701 1,038,829,701	2025-11-21	2025-11-21	PUBLIC	Protocol
KAR24107731	KAE24107731	KAS24174065	E14_WT_Day0_RNA_rep1_RNA-Seq	fastq	E14_WT_Day0_RNA_rep1_R1.fq.gz \| E14_WT_Day0_RNA_rep1_R2.fq.gz	4,720,733,075 4,720,733,075	2025-11-21	2025-11-21	PUBLIC	Protocol
KAR24107732	KAE24107732	KAS24174064	E14_WT_Day0_RNA_rep2_RNA-Seq	fastq	E14_WT_Day0_RNA_rep2_R1.fq.gz \| E14_WT_Day0_RNA_rep2_R2.fq.gz	5,389,458,384 5,389,458,384	2025-11-21	2025-11-21	PUBLIC	Protocol
KAR24107733	KAE24107733	KAS24174073	E14_TKO_Day0_RNA_rep1_RNA-Seq	fastq	E14_TKO_Day0_RNA_rep1_R1.fq.gz \| E14_TKO_Day0_RNA_rep1_R2.fq.gz	5,552,309,919 5,552,309,919	2025-11-21	2025-11-21	PUBLIC	Protocol
KAR24107734	KAE24107734	KAS24174072	E14_TKO_Day0_RNA_rep2_RNA-Seq	fastq	E14_TKO_Day0_RNA_rep2_R1.fq.gz \| E14_TKO_Day0_RNA_rep2_R2.fq.gz	5,250,390,293 5,250,390,293	2025-11-21	2025-11-21	PUBLIC	Protocol
KAR24107735	KAE24107735	KAS24174089	E14_TKO_AEBP2_Long_rescue_Day0_RNA_rep1_RNA-Seq	fastq	E14_TKO_AEBP2_Long_rescue_Day0_RNA_rep1_R1.fq.gz \| E14_TKO_AEBP2_Long_rescue_Day0_RNA_rep1_R2.fq.gz	7,782,984,572 7,782,984,572	2025-11-21	2025-11-21	PUBLIC	Protocol
KAR24107736	KAE24107736	KAS24174088	E14_TKO_AEBP2_Long_rescue_Day0_RNA_rep2_RNA-Seq	fastq	E14_TKO_AEBP2_Long_rescue_Day0_RNA_rep2_R1.fq.gz \| E14_TKO_AEBP2_Long_rescue_Day0_RNA_rep2_R2.fq.gz	5,207,676,129 5,207,676,129	2025-11-21	2025-11-21	PUBLIC	Protocol
KAR24107737	KAE24107737	KAS24174081	E14_TKO_AEBP2_Short_rescue_Day0_RNA_rep1_RNA-Seq	fastq	E14_TKO_AEBP2_Short_rescue_Day0_RNA_rep1_R1.fq.gz \| E14_TKO_AEBP2_Short_rescue_Day0_RNA_rep1_R2.fq.gz	5,565,399,870 5,565,399,870	2025-11-21	2025-11-21	PUBLIC	Protocol
KAR24107738	KAE24107738	KAS24174080	E14_TKO_AEBP2_Short_rescue_Day0_RNA_rep2_RNA-Seq	fastq	E14_TKO_AEBP2_Short_rescue_Day0_RNA_rep2_R1.fq.gz \| E14_TKO_AEBP2_Short_rescue_Day0_RNA_rep2_R2.fq.gz	5,547,239,343 5,547,239,343	2025-11-21	2025-11-21	PUBLIC	Protocol
KAR24107739	KAE24107739	KAS24174063	E14_WT_Day4_RNA_rep1_RNA-Seq	fastq	E14_WT_Day4_RNA_rep1_R1.fq.gz \| E14_WT_Day4_RNA_rep1_R2.fq.gz	4,528,662,861 4,528,662,861	2025-11-21	2025-11-21	PUBLIC	Protocol
KAR24107740	KAE24107740	KAS24174062	E14_WT_Day4_RNA_rep2_RNA-Seq	fastq	E14_WT_Day4_RNA_rep2_R1.fq.gz \| E14_WT_Day4_RNA_rep2_R2.fq.gz	4,292,873,380 4,292,873,380	2025-11-21	2025-11-21	PUBLIC	Protocol
KAR24107741	KAE24107741	KAS24174071	E14_TKO_Day4_RNA_rep1_RNA-Seq	fastq	E14_TKO_Day4_RNA_rep1_R1.fq.gz \| E14_TKO_Day4_RNA_rep1_R2.fq.gz	4,274,854,167 4,274,854,167	2025-11-21	2025-11-21	PUBLIC	Protocol
KAR24107742	KAE24107742	KAS24174070	E14_TKO_Day4_RNA_rep2_RNA-Seq	fastq	E14_TKO_Day4_RNA_rep2_R1.fq.gz \| E14_TKO_Day4_RNA_rep2_R2.fq.gz	4,297,425,812 4,297,425,812	2025-11-21	2025-11-21	PUBLIC	Protocol
KAR24107743	KAE24107743	KAS24174087	E14_TKO_AEBP2_Long_rescue_Day4_RNA_rep1_RNA-Seq	fastq	E14_TKO_AEBP2_Long_rescue_Day4_RNA_rep1_R1.fq.gz \| E14_TKO_AEBP2_Long_rescue_Day4_RNA_rep1_R2.fq.gz	4,288,302,772 4,288,302,772	2025-11-21	2025-11-21	PUBLIC	Protocol
KAR24107744	KAE24107744	KAS24174086	E14_TKO_AEBP2_Long_rescue_Day4_RNA_rep2_RNA-Seq	fastq	E14_TKO_AEBP2_Long_rescue_Day4_RNA_rep2_R1.fq.gz \| E14_TKO_AEBP2_Long_rescue_Day4_RNA_rep2_R2.fq.gz	4,206,662,388 4,206,662,388	2025-11-21	2025-11-21	PUBLIC	Protocol
KAR24107745	KAE24107745	KAS24174079	E14_TKO_AEBP2_Short_rescue_Day4_RNA_rep1_RNA-Seq	fastq	E14_TKO_AEBP2_Short_rescue_Day4_RNA_rep1_R1.fq.gz \| E14_TKO_AEBP2_Short_rescue_Day4_RNA_rep1_R2.fq.gz	4,367,198,854 4,367,198,854	2025-11-21	2025-11-21	PUBLIC	Protocol
KAR24107746	KAE24107746	KAS24174078	E14_TKO_AEBP2_Short_rescue_Day4_RNA_rep2_RNA-Seq	fastq	E14_TKO_AEBP2_Short_rescue_Day4_RNA_rep2_R1.fq.gz \| E14_TKO_AEBP2_Short_rescue_Day4_RNA_rep2_R2.fq.gz	4,452,373,628 4,452,373,628	2025-11-21	2025-11-21	PUBLIC	Protocol

Analysis

(0 cases)

Run Metadata - RUN ID, EXPERIMENT ID, BIOSAMPLE ID, LIBRARY IDENTIFIER, TYPE OF PRIMARY DATA FILE, NAME OF PRIMARY DATA FILE
Analysis ID	analysis type	analysis file	bytes(GB)	Release date	Processed method
No Run data.

Reference

(0 cases)

Run Metadata - RUN ID, EXPERIMENT ID, BIOSAMPLE ID, LIBRARY IDENTIFIER, TYPE OF PRIMARY DATA FILE, NAME OF PRIMARY DATA FILE
reference type	RefSeq accession ID	file name
No Run data.

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KRA Korea Sequence Read Archive