BioProject
지질체 데이터 활용을 위한 품질관리 가이드라인 개발 및 검증
-
AccessionKAP241875
-
Submission date2025-11-20
|
Technique type
|
Mass spectrometry (MS) |
|---|---|
|
Assay Type
|
Chromatography (MS-based) |
|
Species
|
Homo sapiens , Mus |
|
샘플 유형
|
Human , Model organism or animal |
|
추출 프로토콜
|
Lipid extractions were performed by slightly modifying the Matyash method. 100% ice-cold methanol (300 µL) containing 0.1% butylated hydroxytoluene and H2O(90 uL) was added in the plasma(10 uL). After adding 1 mL of methyl-tert-butyl ether with 0.1% butylated hydroxytoluene, the samples were shaken at 20 to 23°C for 1 h. In total, 250 µL of water was added and vortexed for 10 min. Thereafter, phase separation was performed via centrifugation at 14,000g for 15 min at 4°C. For targeted lipidomics analysis, the upper (220 µL) and lower (110 µL) phases were pooled and dried using N2 purge.
,
Lipid extractions were performed by slightly modifying the Matyash method. 75% ice-cold methanol (400 µL) containing 0.1% butylated hydroxytoluene was added in the cell(10^6). After homogenizing the cells were removed using stainless steel beads and TissueLyser (QIAGEN, Germany’s Helden). After adding 1 mL of methyl-tert-butyl ether with 0.1% butylated hydroxytoluene, the samples were shaken at 20 to 23°C for 1 h. In total, 250 µL of water was added and vortexed for 10 min. Thereafter, phase separation was performed via centrifugation at 14,000g for 15 min at 4°C. For targeted lipidomics analysis, the upper (220 µL) and lower (110 µL) phases were pooled and dried using N2 purge.
,
Lipid extractions were performed by slightly modifying the Matyash method. 75% ice-cold methanol (400 µL) containing 0.1% butylated hydroxytoluene was added in the Liver tissue(5 mg). After adding 1 mL of methyl-tert-butyl ether with 0.1% butylated hydroxytoluene, the samples were shaken at 20 to 23°C for 1 h. In total, 250 µL of water was added and vortexed for 10 min. Thereafter, phase separation was performed via centrifugation at 14,000g for 15 min at 4°C. For targeted lipidomics analysis, the upper (220 µL) and lower (110 µL) phases were pooled and dried using N2 purge.
|
|
크로마토그래피 프로토콜
|
Samples were analyzed by liquid chromatography-tandem mass spectrometry (LC-MS/MS, LC-MS 8060, Shimadzu, Kyoto, Japan) with a Kinetex C18 column (100 x 2.1mm i.d., 2.6 μm particle size; Phenomenex, Torrance, CA, USA). Mobile phase A and B consisted of 10 mM ammonium acetate in water/methanol (1/9, v/v) and 10 mM ammonium acetate in methanol/isopropanol (1/1, v/v), respectively. The gradient elution condition was as follows: 30% B (0 min), 95% B (5 min), 95% B (15 min), 30% B (15.1 min) and 30% B (20 min). The sample injection volume was 5 μL and the flow rate was maintained at 0.2 mL/min.
,
Samples were analyzed by liquid chromatography-tandem mass spectrometry (LC-MS/MS, LC-MS 8060, Shimadzu, Kyoto, Japan) with a Kinetex C18 column (100 x 2.1mm i.d., 2.6 μm particle size; Phenomenex, Torrance, CA, USA). Mobile phase A and B consisted of 10 mM ammonium acetate in water/methanol (1/9, v/v) and 10 mM ammonium acetate in methanol/isopropanol (1/1, v/v), respectively. The gradient elution condition was as follows: 30% B (0 min), 95% B (5 min), 95% B (15 min), 30% B (15.1 min) and 30% B (20 min). The sample injection volume was 1 μL and the flow rate was maintained at 0.2 mL/min.
|
|
질량분석 프로토콜
|
The mass operating conditions were as follows: desolvation temperature, 250 ℃; heat block temperature, 400 ℃; spray voltage 4 kV; drying gas (N2) flow rate, 10 L/min; collision gas, argon; nebulizing gas (N2) flow rate, 3 L/min; collision gas pressure, 230 kPa; and detector voltage, 1.66 kV.
|
|
프로젝트의 영문 제목
|
Development and verification of quality control guidelines for the utilization of lipidomic data | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
프로젝트의 국문 제목
|
지질체 데이터 활용을 위한 품질관리 가이드라인 개발 및 검증 | ||||||||||||
|
프로젝트의 영문 설명
|
Metabolome data has been accumulating exponentially like other omics fields as the metabolomics field has grown and expanded to a remarkable level worldwide in the past 10 years. In line with this situation, it is necessary to establish a metabolomic data center and build and operate a global open platform to accumulate and share metabolite big data worldwide. In this study, guidelines for the collection of targeted lipid metabolite data from plasma, cells, and tissues were developed and validated. Lipids in each sample were extracted using a liquid-liquid extraction method using methyl-tert butyl ester (MTBE), and lipid metabolites were analyzed using LC-MS/MS. For the validation of the guideline, independent experiments were conducted by different experimenters using identical samples and the same lipid extraction method. For quantitative comparison, the incurred sample reanalysis (ISR) method was used to secure the reliability of clinical sample analysis results according to FDA guidance. The verification of the analysis method was completed by confirming that 70% of the samples repeatedly analyzed were within 30% of the initial analysis results. | ||||||||||||
|
프로젝트의 국문 설명
|
대사체 데이터는 다른 오믹스 분야와 마찬가지로 지난 10년간 전 세계적으로 놀라운 수준으로 성장하고 확장됨에 따라 기하급수적으로 축적되어 왔습니다. 이러한 상황에 발맞춰 대사체 데이터 센터를 설립하고 전 세계적으로 대사체 빅데이터를 축적하고 공유할 수 있는 글로벌 오픈 플랫폼을 구축 및 운영할 필요가 있습니다. 본 연구에서는 혈장, 세포 및 조직으로부터 표적 지질 대사체 데이터 수집을 위한 가이드라인을 개발하고 검증했습니다. 각 시료의 지질은 메틸-tert 부틸 에스터(MTBE)를 이용한 액-액 추출법으로 추출하였고, 지질 대사체는 LC-MS/MS를 이용하여 분석했습니다. 가이드라인의 검증을 위해 서로 다른 실험자가 동일한 시료와 동일한 지질 추출법을 사용하여 독립적인 실험을 수행했습니다. 정량적 비교를 위해 FDA 지침에 따라 임상 검체 분석 결과의 신뢰성을 확보하기 위해 발생 시료 재분석(ISR) 방법을 사용했습니다. 반복적으로 분석한 시료의 70%가 초기 분석 결과의 30% 이내에 포함됨을 확인하여 분석 방법의 검증을 완료하였습니다. | ||||||||||||
|
Date and Organization
|
|
||||||||||||
|
Grant
|
|
||||||||||||
|
Publication and Patent
|
|
||||||||||||
| File Name | Size | Type | Published | Download | |
|---|---|---|---|---|---|
| 1.lcd | 5,533,696 5,533,696 | lcd | 2025-11-20 | ||
| 10.lcd | 5,513,216 5,513,216 | lcd | 2025-11-20 | ||
| 11.lcd | 5,505,024 5,505,024 | lcd | 2025-11-20 | ||
| 12.lcd | 5,496,832 5,496,832 | lcd | 2025-11-20 | ||
| 13.lcd | 5,509,120 5,509,120 | lcd | 2025-11-20 | ||
| 14.lcd | 5,500,928 5,500,928 | lcd | 2025-11-20 | ||
| 15.lcd | 5,496,832 5,496,832 | lcd | 2025-11-20 | ||
| 16.lcd | 5,500,928 5,500,928 | lcd | 2025-11-20 | ||
| 17.lcd | 5,505,024 5,505,024 | lcd | 2025-11-20 | ||
| 19.lcd | 5,500,928 5,500,928 | lcd | 2025-11-20 | ||
| 2.lcd | 5,521,408 5,521,408 | lcd | 2025-11-20 | ||
| 20.lcd | 5,500,928 5,500,928 | lcd | 2025-11-20 | ||
| 3.lcd | 5,509,120 5,509,120 | lcd | 2025-11-20 | ||
| 4.lcd | 5,513,216 5,513,216 | lcd | 2025-11-20 | ||
| 5.lcd | 5,513,216 5,513,216 | lcd | 2025-11-20 | ||
| 6.lcd | 5,521,408 5,521,408 | lcd | 2025-11-20 | ||
| 7.lcd | 5,521,408 5,521,408 | lcd | 2025-11-20 | ||
| 9.lcd | 5,529,600 5,529,600 | lcd | 2025-11-20 | ||
| H1.lcd | 2,523,136 2,523,136 | lcd | 2025-11-20 | ||
| H2.lcd | 2,588,672 2,588,672 | lcd | 2025-11-20 | ||
| H3.lcd | 2,576,384 2,576,384 | lcd | 2025-11-20 | ||
| H4.lcd | 2,568,192 2,568,192 | lcd | 2025-11-20 | ||
| H5.lcd | 2,580,480 2,580,480 | lcd | 2025-11-20 | ||
| H6.lcd | 2,584,576 2,584,576 | lcd | 2025-11-20 | ||
| H8.lcd | 2,527,232 2,527,232 | lcd | 2025-11-20 | ||
| N1.lcd | 2,523,136 2,523,136 | lcd | 2025-11-20 | ||
| N1.lcd | 2,981,888 2,981,888 | lcd | 2025-11-20 | ||
| N2.lcd | 2,985,984 2,985,984 | lcd | 2025-11-20 | ||
| N2.lcd | 2,572,288 2,572,288 | lcd | 2025-11-20 | ||
| N3.lcd | 2,981,888 2,981,888 | lcd | 2025-11-20 | ||
| N3.lcd | 2,576,384 2,576,384 | lcd | 2025-11-20 | ||
| N4.lcd | 2,994,176 2,994,176 | lcd | 2025-11-20 | ||
| N4.lcd | 2,543,616 2,543,616 | lcd | 2025-11-20 | ||
| N5.lcd | 2,531,328 2,531,328 | lcd | 2025-11-20 | ||
| N5.lcd | 2,981,888 2,981,888 | lcd | 2025-11-20 | ||
| N6.lcd | 2,584,576 2,584,576 | lcd | 2025-11-20 | ||
| N6.lcd | 3,006,464 3,006,464 | lcd | 2025-11-20 | ||
| N9.lcd | 2,510,848 2,510,848 | lcd | 2025-11-20 | ||
| N9.lcd | 2,777,088 2,777,088 | lcd | 2025-11-20 | ||
| ND_1.lcd | 4,964,352 4,964,352 | lcd | 2025-11-20 | ||
| ND_1.lcd | 4,972,544 4,972,544 | lcd | 2025-11-20 | ||
| ND_2.lcd | 4,972,544 4,972,544 | lcd | 2025-11-20 | ||
| ND_2.lcd | 4,964,352 4,964,352 | lcd | 2025-11-20 | ||
| ND_3.lcd | 4,968,448 4,968,448 | lcd | 2025-11-20 | ||
| ND_3.lcd | 4,976,640 4,976,640 | lcd | 2025-11-20 | ||
| ND_4.lcd | 4,968,448 4,968,448 | lcd | 2025-11-20 | ||
| ND_4.lcd | 4,964,352 4,964,352 | lcd | 2025-11-20 | ||
| ND_5.lcd | 4,972,544 4,972,544 | lcd | 2025-11-20 | ||
| ND_5.lcd | 4,976,640 4,976,640 | lcd | 2025-11-20 | ||
| O1.lcd | 2,990,080 2,990,080 | lcd | 2025-11-20 | ||
| O2.lcd | 2,990,080 2,990,080 | lcd | 2025-11-20 | ||
| O3.lcd | 2,985,984 2,985,984 | lcd | 2025-11-20 | ||
| O4.lcd | 2,977,792 2,977,792 | lcd | 2025-11-20 | ||
| O5.lcd | 3,006,464 3,006,464 | lcd | 2025-11-20 | ||
| O6.lcd | 2,990,080 2,990,080 | lcd | 2025-11-20 | ||
| O8.lcd | 2,998,272 2,998,272 | lcd | 2025-11-20 | ||
| QC_01.lcd | 5,500,928 5,500,928 | lcd | 2025-11-20 | ||
| QC_02.lcd | 5,500,928 5,500,928 | lcd | 2025-11-20 | ||
| QC_03.lcd | 5,505,024 5,505,024 | lcd | 2025-11-20 | ||
| QC_04.lcd | 5,505,024 5,505,024 | lcd | 2025-11-20 | ||
| QC_05.lcd | 5,521,408 5,521,408 | lcd | 2025-11-20 | ||
| QC_06.lcd | 5,525,504 5,525,504 | lcd | 2025-11-20 | ||
| QC_07.lcd | 5,521,408 5,521,408 | lcd | 2025-11-20 | ||
| QC_08.lcd | 5,517,312 5,517,312 | lcd | 2025-11-20 | ||
| QC_1.lcd | 4,993,024 4,993,024 | lcd | 2025-11-20 | ||
| QC_1.lcd | 5,513,216 5,513,216 | lcd | 2025-11-20 | ||
| QC_1.lcd | 2,977,792 2,977,792 | lcd | 2025-11-20 | ||
| QC_1.lcd | 2,543,616 2,543,616 | lcd | 2025-11-20 | ||
| QC_1.lcd | 4,980,736 4,980,736 | lcd | 2025-11-20 | ||
| QC_2.lcd | 5,513,216 5,513,216 | lcd | 2025-11-20 | ||
| QC_2.lcd | 4,997,120 4,997,120 | lcd | 2025-11-20 | ||
| QC_2.lcd | 2,973,696 2,973,696 | lcd | 2025-11-20 | ||
| QC_2.lcd | 2,572,288 2,572,288 | lcd | 2025-11-20 | ||
| QC_2.lcd | 4,988,928 4,988,928 | lcd | 2025-11-20 | ||
| QC_3.lcd | 2,572,288 2,572,288 | lcd | 2025-11-20 | ||
| QC_3.lcd | 5,517,312 5,517,312 | lcd | 2025-11-20 | ||
| QC_3.lcd | 4,988,928 4,988,928 | lcd | 2025-11-20 | ||
| QC_3.lcd | 4,997,120 4,997,120 | lcd | 2025-11-20 | ||
| QC_3.lcd | 2,981,888 2,981,888 | lcd | 2025-11-20 | ||
| QC_4.lcd | 2,588,672 2,588,672 | lcd | 2025-11-20 | ||
| QC_4.lcd | 4,997,120 4,997,120 | lcd | 2025-11-20 | ||
| QC_4.lcd | 4,984,832 4,984,832 | lcd | 2025-11-20 | ||
| QC_4.lcd | 2,977,792 2,977,792 | lcd | 2025-11-20 | ||
| QC_4.lcd | 5,513,216 5,513,216 | lcd | 2025-11-20 | ||
| QC_5.lcd | 2,514,944 2,514,944 | lcd | 2025-11-20 | ||
| QC_5.lcd | 4,997,120 4,997,120 | lcd | 2025-11-20 | ||
| QC_5.lcd | 4,988,928 4,988,928 | lcd | 2025-11-20 | ||
| QC_5.lcd | 5,509,120 5,509,120 | lcd | 2025-11-20 | ||
| QC_5.lcd | 2,998,272 2,998,272 | lcd | 2025-11-20 | ||
| QC_6.lcd | 5,509,120 5,509,120 | lcd | 2025-11-20 | ||
| QC_6.lcd | 4,988,928 4,988,928 | lcd | 2025-11-20 | ||
| QC_6.lcd | 2,564,096 2,564,096 | lcd | 2025-11-20 | ||
| QC_6.lcd | 2,981,888 2,981,888 | lcd | 2025-11-20 | ||
| QC_6.lcd | 5,001,216 5,001,216 | lcd | 2025-11-20 | ||
| QC_7.lcd | 2,973,696 2,973,696 | lcd | 2025-11-20 | ||
| QC_7.lcd | 4,993,024 4,993,024 | lcd | 2025-11-20 | ||
| QC_7.lcd | 5,513,216 5,513,216 | lcd | 2025-11-20 | ||
| QC_7.lcd | 2,580,480 2,580,480 | lcd | 2025-11-20 | ||
| QC_7.lcd | 5,001,216 5,001,216 | lcd | 2025-11-20 | ||
| QC_8.lcd | 2,580,480 2,580,480 | lcd | 2025-11-20 | ||
| QC_8.lcd | 2,977,792 2,977,792 | lcd | 2025-11-20 | ||
| QC_8.lcd | 4,997,120 4,997,120 | lcd | 2025-11-20 | ||
| QC_8.lcd | 4,993,024 4,993,024 | lcd | 2025-11-20 | ||
| QC_8.lcd | 5,513,216 5,513,216 | lcd | 2025-11-20 |
KMAP
-
대사체 데이터