BioProject
다양한 숙주 환경에서의 황색포도상구균 생존 메커니즘 연구
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AccessionKAP241629
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Submission date2025-09-17
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Technique type
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Mass spectrometry (MS) |
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Assay Type
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Chromatography (MS-based) |
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Species
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Staphylococcus aureus subsp. aureus USA300_TCH1516 |
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샘플 유형
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Microbe |
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추출 프로토콜
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At the designated time points, whole blood or TSB samples were centrifuged for 2 min at 13,523 x g, 4 ºC. The supernatant was vortexed and mixed with cold methanol (v/v ratio 1:2). All samples mixed with methanol were centrifuged for 2 minutes at 4 ºC, 15,871 x g. Supernatant was added to Spin-X centrifuge tubes (Corning Inc., Corning, NY) and centrifuged at 4 ºC, 15,871 x g one more time.
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Bacteria was quenched by a mixture of methanol/acetonitrile/H2O (40:40:20). Then, metabolites were extracted by mechanical disruption with 0.07–0.1 mm glass beads using a tissue homogenizer. Lysates were filtered through a 0.2-μm microcentrifuge filter.
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크로마토그래피 프로토콜
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Extracted metabolites were separated using Cogent diamond hydride type C column. The gradient elution of metabolites was conducted using solvent A (DDW with 0.2% formic acid) and solvent B (acetonitrile with 0.2% formic acid). Detailed condition for gradient elution is as follows: 0–2 min, 85% B; 3–5 min, 80% B; 6–7 min, 75%; 8–9 min, 70% B; 10–11.1 min, 50% B; 11.1–14 min 20% B; 14.1–24 min 5% B followed by a 10 min re-equilibration time at a flow rate of 0.4 mL/min.
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질량분석 프로토콜
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LC-MS analysis for metabolic profiling was conducted using Agilent time-of-flight(TOF) mass spectrometry coupled with Agilent 1290 liquid chromatography system.
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프로젝트의 영문 제목
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Environmental cues in different host niches shape the survival fitness of Staphylococcus aureus | ||||||||||||
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프로젝트의 국문 제목
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다양한 숙주 환경에서의 황색포도상구균 생존 메커니즘 연구 | ||||||||||||
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프로젝트의 영문 설명
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The ability of Staphylococcus aureus to adapt and thrive in diverse host niches adds to the challenge in combating this ubiquitous pathogen. While extensive research has been pursued on the adaptive mechanisms of methicillin-resistant S. aureus (MRSA) in various infection models, a comprehensive analysis of its fitness across different host niches is lacking. In this study, we employ transposon sequencing to analyze the adaptive strategies of MRSA in various infection niches. Our analysis encompasses a cell model that mimics an intracellular niche, human blood, which represents a major extracellular environment as well as a major intermediary route encountered by bacteria during systemic infection, and a murine sepsis model that recapitulates intra-organ environments. Our findings reveal substantial differences in the genetic determinants essential for bacterial survival in intracellular and blood environments. Moreover, we show that each organ imposes unique growth constraints, thus fostering heterogeneity within the mutant population that can enter and survive in each organ of the male mouse. By comparing genes important for survival across all examined host environments, we identify 27 core genes that represent potential therapeutic targets for treating S. aureus infections. Additionally, our findings aid in understanding how bacteria adapt to diverse host environments. | ||||||||||||
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프로젝트의 국문 설명
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황색포도상구균은 다양한 숙주 환경에 적응할 수 있는 능력이 있어 치료하기 어려운 감염균임. 항생제 내성 황색포도상구균 균주들의 숙주 환경 생존 메커니즘에 대한 연구가 진행이 되어있으나 다양한 숙주환경을 포괄적으로 연구가 되어있지는 않음. 본 연구에서는 Transposon sequencing을 이용하여 항생제 내성 황색포도상구균이 다양한 숙주 환경에서 적응하는 메커니즘을 연구함. 본 연구에는 세포 내 환경, 혈액 내 환경, 그리고 마우스 감염 모델의 장기 내 감염 환경을 모사한 모델을 모두 이용하였음. 본 연구의 결과로 세포 내 환경과 혈액 내 환경에서의 생존에는 각기 다른 유전자군이 관여함을 밝혔을 뿐만 아니라 마우스 감염 모델에서 각 장기 내 감염에 관여하는 유전자들에 이질성이 있음을 밝혔음. 또한 본 연구에서 사용된 세가지의 숙주 모델 모두에서의 생존에 관여하는 유전자군이 황색포도상구균의 감염을 치료하는데에 주요 유전자군이 될 수 있음을 보여줌. | ||||||||||||
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Date and Organization
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Grant
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Publication and Patent
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| File Name | Size | Type | Published | Download | |
|---|---|---|---|---|---|
| Blood_AA_0_1.d.zip | 32,829,655 32,829,655 | zip | 2025-07-09 | ||
| Blood_AA_0_2.d.zip | 32,215,956 32,215,956 | zip | 2025-07-09 | ||
| Blood_AA_0_3.d.zip | 32,654,847 32,654,847 | zip | 2025-07-09 | ||
| Blood_AA_12_2.d.zip | 32,694,242 32,694,242 | zip | 2025-07-09 | ||
| Blood_AA_12_3.d.zip | 30,833,824 30,833,824 | zip | 2025-07-09 | ||
| Blood_AA_12_5.d.zip | 32,217,697 32,217,697 | zip | 2025-07-09 | ||
| Blood_AA_24_1.d.zip | 33,999,556 33,999,556 | zip | 2025-07-09 | ||
| Blood_AA_24_3.d.zip | 33,776,305 33,776,305 | zip | 2025-07-09 | ||
| Blood_AA_24_5.d.zip | 33,798,538 33,798,538 | zip | 2025-07-09 | ||
| Blood_AA_9_2.d.zip | 31,747,669 31,747,669 | zip | 2025-07-09 | ||
| Blood_AA_9_3.d.zip | 31,592,292 31,592,292 | zip | 2025-07-09 | ||
| Blood_AA_9_5.d.zip | 31,128,606 31,128,606 | zip | 2025-07-09 | ||
| Blood_bac_12_1.d.zip | 33,690,394 33,690,394 | zip | 2025-07-09 | ||
| Blood_bac_12_2.d.zip | 33,655,809 33,655,809 | zip | 2025-07-09 | ||
| Blood_bac_12_4.d.zip | 33,596,854 33,596,854 | zip | 2025-07-09 | ||
| Blood_bac_24_2.d.zip | 31,614,017 31,614,017 | zip | 2025-07-09 | ||
| Blood_bac_24_3.d.zip | 32,533,930 32,533,930 | zip | 2025-07-09 | ||
| Blood_bac_24_4.d.zip | 33,399,628 33,399,628 | zip | 2025-07-09 | ||
| Blood_GL_0_3.d.zip | 28,195,035 28,195,035 | zip | 2025-07-09 | ||
| Blood_GL_0_4.d.zip | 28,132,680 28,132,680 | zip | 2025-07-09 | ||
| Blood_GL_0_5.d.zip | 28,086,117 28,086,117 | zip | 2025-07-09 | ||
| Blood_GL_12_1.d.zip | 30,907,440 30,907,440 | zip | 2025-07-09 | ||
| Blood_GL_12_3.d.zip | 30,510,226 30,510,226 | zip | 2025-07-09 | ||
| Blood_GL_12_5.d.zip | 30,350,914 30,350,914 | zip | 2025-07-09 | ||
| Blood_GL_24_2.d.zip | 31,758,360 31,758,360 | zip | 2025-07-09 | ||
| Blood_GL_24_3.d.zip | 31,651,782 31,651,782 | zip | 2025-07-09 | ||
| Blood_GL_24_4.d.zip | 31,252,797 31,252,797 | zip | 2025-07-09 | ||
| Blood_GL_3_2.d.zip | 29,090,102 29,090,102 | zip | 2025-07-09 | ||
| Blood_GL_3_3.d.zip | 29,277,401 29,277,401 | zip | 2025-07-09 | ||
| Blood_GL_3_5.d.zip | 28,779,211 28,779,211 | zip | 2025-07-09 | ||
| Blood_GL_36_1.d.zip | 35,483,772 35,483,772 | zip | 2025-07-09 | ||
| Blood_GL_36_2.d.zip | 34,648,387 34,648,387 | zip | 2025-07-09 | ||
| Blood_GL_36_4.d.zip | 33,105,805 33,105,805 | zip | 2025-07-09 | ||
| Blood_GL_6_3.d.zip | 29,381,836 29,381,836 | zip | 2025-07-09 | ||
| Blood_GL_6_4.d.zip | 29,096,558 29,096,558 | zip | 2025-07-09 | ||
| Blood_GL_6_5.d.zip | 29,060,767 29,060,767 | zip | 2025-07-09 | ||
| Blood_GL_9_1.d.zip | 29,913,453 29,913,453 | zip | 2025-07-09 | ||
| Blood_GL_9_2.d.zip | 29,696,897 29,696,897 | zip | 2025-07-09 | ||
| Blood_GL_9_5.d.zip | 29,424,285 29,424,285 | zip | 2025-07-09 | ||
| TSB_bac_12_1.d.zip | 32,084,997 32,084,997 | zip | 2025-07-09 | ||
| TSB_bac_12_2.d.zip | 32,530,512 32,530,512 | zip | 2025-07-09 | ||
| TSB_bac_12_3.d.zip | 32,666,113 32,666,113 | zip | 2025-07-09 | ||
| TSB_bac_24_1.d.zip | 31,504,858 31,504,858 | zip | 2025-07-09 | ||
| TSB_bac_24_2.d.zip | 31,511,000 31,511,000 | zip | 2025-07-09 | ||
| TSB_bac_24_3.d.zip | 32,039,982 32,039,982 | zip | 2025-07-09 | ||
| TSB_Con_0_1.d.zip | 28,032,000 28,032,000 | zip | 2025-07-09 | ||
| TSB_Con_0_2.d.zip | 28,592,085 28,592,085 | zip | 2025-07-09 | ||
| TSB_Con_0_3.d.zip | 28,910,255 28,910,255 | zip | 2025-07-09 | ||
| TSB_GL_0_2.d.zip | 24,370,823 24,370,823 | zip | 2025-07-09 | ||
| TSB_GL_0_3.d.zip | 24,188,958 24,188,958 | zip | 2025-07-09 | ||
| TSB_GL_0_5.d.zip | 24,257,663 24,257,663 | zip | 2025-07-09 | ||
| TSB_GL_12_3.d.zip | 24,337,274 24,337,274 | zip | 2025-07-09 | ||
| TSB_GL_12_4.d.zip | 24,631,695 24,631,695 | zip | 2025-07-09 | ||
| TSB_GL_12_5.d.zip | 24,381,011 24,381,011 | zip | 2025-07-09 | ||
| TSB_GL_24_3.d.zip | 24,952,384 24,952,384 | zip | 2025-07-09 | ||
| TSB_GL_24_4.d.zip | 24,379,965 24,379,965 | zip | 2025-07-09 | ||
| TSB_GL_24_5.d.zip | 24,227,497 24,227,497 | zip | 2025-07-09 | ||
| TSB_GL_3_3.d.zip | 24,352,685 24,352,685 | zip | 2025-07-09 | ||
| TSB_GL_3_4.d.zip | 24,356,565 24,356,565 | zip | 2025-07-09 | ||
| TSB_GL_3_5.d.zip | 24,419,147 24,419,147 | zip | 2025-07-09 | ||
| TSB_GL_36_1.d.zip | 24,187,819 24,187,819 | zip | 2025-07-09 | ||
| TSB_GL_36_4.d.zip | 23,943,796 23,943,796 | zip | 2025-07-09 | ||
| TSB_GL_36_5.d.zip | 24,120,797 24,120,797 | zip | 2025-07-09 | ||
| TSB_GL_6_2.d.zip | 24,419,958 24,419,958 | zip | 2025-07-09 | ||
| TSB_GL_6_3.d.zip | 24,111,693 24,111,693 | zip | 2025-07-09 | ||
| TSB_GL_6_4.d.zip | 24,295,109 24,295,109 | zip | 2025-07-09 | ||
| TSB_GL_9_2.d.zip | 24,440,577 24,440,577 | zip | 2025-07-09 | ||
| TSB_GL_9_3.d.zip | 24,215,430 24,215,430 | zip | 2025-07-09 | ||
| TSB_GL_9_4.d.zip | 24,243,415 24,243,415 | zip | 2025-07-09 |
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