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Study Development of experimental protocols and data analysis methods for single cell multi-omics
Study Information
Accession
 SCS2201491
Date and Organization
Processed date 2023-12-31
Oranization Seoul National University
Publication
PubMed ID of publication
DOI of publication
Conditions
Species
Scientific Name Mus musculus
Taxonomy ID 10090
Tissue
 Lung
Treatment
 OVA+LPS/OVA, OVA+LPS/OVA+aIL-12p75, OVA+LPS/OVA+aIL-23p19, OVA+LPS/OVA+Dex, OVA+LPS/PBS
Sex
 Male
Cell Line
 -
Age
 6-8 weeks
Cell Type
 CD45+ cell
Development Stage
 -
Cell Subtype
 B cell, Dendritic cell, Macrophage, Monocyte, NK cell, Neutrophil, Unknown
Disease
 -
Isolate
 -
Disease Stage
 -
Genotype
 Wild Type
Helath State
 -
Associated K-BDS/scDB
BioProject
 KAP220149
scDB Study
 N/A
BioSample
 All samples [5]
scDB Data
 All Data [5]
KRA
 All experiments [5]
Cell Browser
Cell Browse
Cell Browser
Cell Browser
Cell-cell interaction
Scatter plot
File
file 목록
File Name Size Type Published Download
SCS2201491_adata_cellType_annotated.h5ad 3,055,301,847 3,055,301,847 h5ad
SCS2201491_cell_metadata.csv 11,366,849 11,366,849 csv
SCS2201491_celltype_B cell_DEG_wilcoxon.csv 2,483,304 2,483,304 csv
SCS2201491_celltype_Dendritic cell_DEG_wilcoxon.csv 2,704,869 2,704,869 csv
SCS2201491_celltype_Macrophage_DEG_wilcoxon.csv 2,616,284 2,616,284 csv
SCS2201491_celltype_Monocyte_DEG_wilcoxon.csv 2,552,534 2,552,534 csv
SCS2201491_celltype_Neutrophil_DEG_wilcoxon.csv 2,588,546 2,588,546 csv
SCS2201491_celltype_NK cell_DEG_wilcoxon.csv 2,537,325 2,537,325 csv
SCS2201491_celltype_Unknown_DEG_wilcoxon.csv 2,524,897 2,524,897 csv
SCS2201491_detected_gene_list.csv 178,778 178,778 csv
SCS2201491_hvg_list.csv 19,378 19,378 csv
SCS2201491_leiden_0_DEG_wilcoxon.csv 2,380,648 2,380,648 csv
SCS2201491_leiden_1_DEG_wilcoxon.csv 2,408,000 2,408,000 csv
SCS2201491_leiden_10_DEG_wilcoxon.csv 2,415,553 2,415,553 csv
SCS2201491_leiden_11_DEG_wilcoxon.csv 2,408,209 2,408,209 csv
SCS2201491_leiden_12_DEG_wilcoxon.csv 2,409,306 2,409,306 csv
SCS2201491_leiden_13_DEG_wilcoxon.csv 2,416,143 2,416,143 csv
SCS2201491_leiden_14_DEG_wilcoxon.csv 2,412,619 2,412,619 csv
SCS2201491_leiden_15_DEG_wilcoxon.csv 2,422,821 2,422,821 csv
SCS2201491_leiden_16_DEG_wilcoxon.csv 2,453,316 2,453,316 csv
SCS2201491_leiden_17_DEG_wilcoxon.csv 2,454,202 2,454,202 csv
SCS2201491_leiden_2_DEG_wilcoxon.csv 2,391,057 2,391,057 csv
SCS2201491_leiden_3_DEG_wilcoxon.csv 2,385,908 2,385,908 csv
SCS2201491_leiden_4_DEG_wilcoxon.csv 2,361,532 2,361,532 csv
SCS2201491_leiden_5_DEG_wilcoxon.csv 2,383,328 2,383,328 csv
SCS2201491_leiden_6_DEG_wilcoxon.csv 2,349,666 2,349,666 csv
SCS2201491_leiden_7_DEG_wilcoxon.csv 2,407,000 2,407,000 csv
SCS2201491_leiden_8_DEG_wilcoxon.csv 2,367,197 2,367,197 csv
SCS2201491_leiden_9_DEG_wilcoxon.csv 2,415,581 2,415,581 csv
SCS2201491_pca_embeddings.csv 15,816,880 15,816,880 csv
SCS2201491_tsne_embeddings.csv 1,566,320 1,566,320 csv
SCS2201491_umap_embeddings.csv 1,550,278 1,550,278 csv
SCS2201491_valiDrops_filtered_mtx.tar.gz 74,784,109 74,784,109 gz
Analysis pipeline(v2025.12)