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BioProject
비피도박테리움의 종간 대사체학적 차이

  • Accession
    KAP242689
  • Submission date
    2026-09-30


Technique type
Mass spectrometry (MS)
Assay Type
Chromatography (MS-based)
Species
unidentified , Bifidobacterium bifidum , Bifidobacterium animalis subsp. animalis IM386 , Bifidobacterium breve , Bifidobacterium longum
샘플 유형
Microbe
추출 프로토콜
To extract the intracellular metabolites, 50 mg of microbe was suspended in 1ml of pure methanol. The samples were homogenized for 10 min using a mixer mill, followed by sonication for 10 min at room temperature. After centrifugation at 15,000 ×g for 10 min at 4°C, the supernatant was carefully collected and concentrated using a speed vacuum. The dried extract was reconstituted in 100% methanol to achieve a final concentration of 4 mg/ml. A 100 μl aliquot was transferred into a vial for subsequent mass spectrometry analysis.
크로마토그래피 프로토콜
ACQUITY UPLC HSS T3 column (100 mm × 2.1 mm, 1.8 μm particle size; Waters Co., MA, USA) and a mobile phase consisting of 0.1% (v/v) formic acid in water (solvent A) and ACN (solvent B). A solvent gradient (vol. %) as follows: 0–1 min, 5% B; 1–10 min, 5–100% B; 10–11 min, 100% B; 11–13 min, 100–5% B; and 13–15 min, 5% B.
질량분석 프로토콜
LC was conducted using a Vanquish Core UHPLC system (Thermo Fisher Scientific), and mass spectra were acquired using an Orbitrap Exploris 120 Mass Spectrometer (Thermo Fisher Scientific).