BioProject
그레이브즈 안병증의 진단을 혈장 시료 대사체 분석
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AccessionKAP240754
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Submission date2024-06-26
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Technique type
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Mass spectrometry (MS) |
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Assay Type
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Chromatography (MS-based) |
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Species
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Homo sapiens |
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샘플 유형
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Human |
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추출 프로토콜
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Analytical processes were performed in random order, including extraction, derivatization, reconstitution, and MS analysis. Metabolite was extracted by mixing 50 µL of mid-trimester maternal serum and tertiary solvent mixture (750 µL, methanol:isopropanol:water, 3:3:2, v/v/v) followed by 10-min sonication and centrifugation (13,200 rpm for 5 minutes at 4°C). Aliquot (750 µL) was transferred into a new 1.5-mL tube and concentrated to complete dryness in a speed vacuum concentrator (SCANVAC, Korea). The dried extracts were stored at -80°C.
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크로마토그래피 프로토콜
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LC separations were carried out on an Acquity UPLC BEH C18 column (100 x 2.1 mm, particle size 1.7 µm, Waters, USA). Column temperature and flow rate were set to 40 °C and 0.3 ml/min, respectively. The mobile phases used were 10 mM ammonium formate in an acetonitrile:water mixture (90:10, v/v) (A) and acetonitrile:water mixture (10:90, v/v) (B). The linear gradients were as follows: 40–65% B for 5 min, 65-70% B for 7 min, 70-99% B for 3 min, 99% B for 2 min, 40% B for 3 min. The injection volume of the sample was 2 μl using partial loop mode for both positive and negative ionization polarity modes. Quality control (QC) samples, pooling identical aliquots of the samples, were measured regularly throughout the run for data reproducibility.
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질량분석 프로토콜
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MS analysis was performed using Q-Exactive Plus Orbitrap (ionization mode: negative, Scan parameter: full scan/ddMS2, scan range: 70-1,000 m/z, resolution: 70,000, automatic gain control: 1e6, maximum injection time: 100 ms, HESI-II voltage: 3500v, S-lens radio frequency level: 50 v, capillary temperature: 300°C). MS/MS analysis was conducted in data-dependent manner (HCD, 30 eV). Raw data (.raw format) was transformed to Analysis Base File (ABF) format by Reifycs Abf Converter (http://www.reifycs.com/AbfConverter/index.html). Data process (compound identification and semi-quantification) was done by the MS-DIAL software and Lipid Blast library (MS1 tolerance : 0.005Da, MS2 tolerance : 0.01Da, similarity score: 75%).
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프로젝트의 영문 제목
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The diagnosis of Graves' disease through plasma sample metabolomic analysis. | ||||||||||||
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프로젝트의 국문 제목
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그레이브즈 안병증의 진단을 혈장 시료 대사체 분석 | ||||||||||||
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프로젝트의 영문 설명
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Graves' disease is an autoimmune disorder that causes excessive production of thyroid hormones, leading to systemic metabolic dysfunction. Through LC-MS analysis, the aim is to discover biomarkers that can differentiate between Graves' disease patients with Graves' ophthalmopathy and those without. | ||||||||||||
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프로젝트의 국문 설명
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Graves’ disease는 자가면역 장애로, 갑상선 호르몬의 과다 생산과 이로 인한 전신 대사 기능 장애를 일으키는 질병임. LC-MS 분석을 통해 Graves’ ophthalmopathy를 갖는 Graves’ disease환자와 그렇지 않은 Graves’ disease 환자를 구별할 수 있는 바이오마커를 찾고자 함 | ||||||||||||
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Date and Organization
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Grant
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Publication and Patent
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KMAP
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대사체 데이터