BioProject
임신중독 2차 대사체 분석
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AccessionKAP240753
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Submission date2024-06-26
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Technique type
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Mass spectrometry (MS) |
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Assay Type
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Chromatography (MS-based) |
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Species
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Homo sapiens |
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샘플 유형
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Human |
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추출 프로토콜
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Analytical processes were performed in random order, including extraction, derivatization, reconstitution, and MS analysis. Metabolite was extracted by mixing 50 µL of mid-trimester maternal serum and tertiary solvent. mixture (750 µL, methanol:isopropanol:water, 3:3:2, v/v/v) followed by 10-min sonication and centrifugation (13,200 rpm for 5 minutes at 4°C). Aliquot (750 µL) was transferred into a new 1.5-mL tube and concentrated to complete dryness in a speed vacuum concentrator (SCANVAC, Korea). The dried extracts were stored at -80°C
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크로마토그래피 프로토콜
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LC separations were carried out on an Acquity UPLC BEH C18 column (100 x 2.1 mm, particle size 1.7 µm, Waters, USA). Column temperature and flow rate were set to 40 °C and 0.3 ml/min, respectively. The mobile phases used were 10 mM ammonium formate in an acetonitrile:water mixture (90:10, v/v) (A) and acetonitrile:water mixture (10:90, v/v) (B). The linear gradients were as follows: 40–65% B for 5 min, 65-70% B for 7 min, 70-99% B for 3 min, 99% B for 2 min, 40% B for 3 min. The injection volume of the sample was 2 μl using partial loop mode for both positive and negative ionization polarity modes. Quality control (QC) samples, pooling identical aliquots of the samples, were measured regularly throughout the run for data reproducibility.
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질량분석 프로토콜
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MS analysis was performed using Q-Exactive Plus Orbitrap (ionization mode: negative, Scan parameter: full scan/ddMS2, scan range: 70-1,000 m/z, resolution: 70,000, automatic gain control: 1e6, maximum injection time: 100 ms, HESI-II voltage: 3500v, S-lens radio frequency level: 50 v, capillary temperature: 300°C). MS/MS analysis was conducted in data-dependent manner (HCD, 30 eV). Raw data (.raw format) was transformed to Analysis Base File (ABF) format by Reifycs Abf Converter (http://www.reifycs.com/AbfConverter/index.html). Data process (compound identification and semi-quantification) was done by the MS-DIAL software and Lipid Blast library (MS1 tolerance : 0.005Da, MS2 tolerance : 0.01Da, similarity score: 75%).
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프로젝트의 영문 제목
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Second Trimester Metabolic Analysis in Pregnancy Intoxication | ||||||||||||
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프로젝트의 국문 제목
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임신중독 2차 대사체 분석 | ||||||||||||
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프로젝트의 영문 설명
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Pregnancy intoxication refers to symptoms such as hypertension, edema, and proteinuria that occur in pregnant women after 20 weeks due to various causes. The aim is to discover biomarkers through MS/MS that can differentiate between healthy and diseased groups. | ||||||||||||
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프로젝트의 국문 설명
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임신중독은 20주 이상 임산부에게 여러 가지 원인으로 인해 나타나는 고혈압, 부종, 단백뇨 등의 증상을 말함. MS/MS를 통해 건강군과 질병군을 구분할 수 있는 바이오마커를 발굴하고자 함 | ||||||||||||
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Date and Organization
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Grant
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Publication and Patent
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| File Name | Size | Type | Published | Download | |
|---|---|---|---|---|---|
| Con1.raw | 46,139,887 46,139,887 | raw | 2023-12-14 | ||
| Con10.raw | 47,054,828 47,054,828 | raw | 2023-12-14 | ||
| Con13.raw | 46,963,565 46,963,565 | raw | 2023-12-14 | ||
| Con15.raw | 46,769,840 46,769,840 | raw | 2023-12-14 | ||
| Con16.raw | 49,231,241 49,231,241 | raw | 2023-12-14 | ||
| Con17.raw | 46,909,155 46,909,155 | raw | 2023-12-14 | ||
| Con18.raw | 46,437,266 46,437,266 | raw | 2023-12-14 | ||
| Con2.raw | 47,099,010 47,099,010 | raw | 2023-12-14 | ||
| Con20.raw | 45,623,295 45,623,295 | raw | 2023-12-14 | ||
| Con22.raw | 46,552,238 46,552,238 | raw | 2023-12-14 | ||
| Con23.raw | 47,298,281 47,298,281 | raw | 2023-12-14 | ||
| Con24.raw | 45,858,146 45,858,146 | raw | 2023-12-14 | ||
| Con26.raw | 46,031,012 46,031,012 | raw | 2023-12-14 | ||
| Con27.raw | 46,099,464 46,099,464 | raw | 2023-12-14 | ||
| Con29.raw | 46,485,619 46,485,619 | raw | 2023-12-14 | ||
| Con3.raw | 50,330,523 50,330,523 | raw | 2023-12-14 | ||
| Con31.raw | 51,733,149 51,733,149 | raw | 2023-12-14 | ||
| Con32.raw | 56,159,334 56,159,334 | raw | 2023-12-14 | ||
| Con33.raw | 46,140,824 46,140,824 | raw | 2023-12-14 | ||
| Con4.raw | 48,363,455 48,363,455 | raw | 2023-12-14 | ||
| Con5.raw | 46,471,652 46,471,652 | raw | 2023-12-14 | ||
| Mf1.raw | 54,475,698 54,475,698 | raw | 2023-12-14 | ||
| Mf2.raw | 55,931,669 55,931,669 | raw | 2023-12-14 | ||
| Mf3.raw | 48,880,139 48,880,139 | raw | 2023-12-14 | ||
| Mf4.raw | 54,373,744 54,373,744 | raw | 2023-12-14 | ||
| Mf5.raw | 52,685,803 52,685,803 | raw | 2023-12-14 | ||
| Mf6.raw | 54,803,355 54,803,355 | raw | 2023-12-14 | ||
| PE1.raw | 47,742,376 47,742,376 | raw | 2023-12-14 | ||
| PE10.raw | 55,105,632 55,105,632 | raw | 2023-12-14 | ||
| PE11.raw | 54,093,985 54,093,985 | raw | 2023-12-14 | ||
| PE12.raw | 46,720,871 46,720,871 | raw | 2023-12-14 | ||
| PE13.raw | 54,278,299 54,278,299 | raw | 2023-12-14 | ||
| PE14.raw | 55,160,968 55,160,968 | raw | 2023-12-14 | ||
| PE15.raw | 55,871,646 55,871,646 | raw | 2023-12-14 | ||
| PE16.raw | 48,502,690 48,502,690 | raw | 2023-12-14 | ||
| PE2.raw | 54,841,120 54,841,120 | raw | 2023-12-14 | ||
| PE3.raw | 53,498,398 53,498,398 | raw | 2023-12-14 | ||
| PE4.raw | 47,895,706 47,895,706 | raw | 2023-12-14 | ||
| PE5.raw | 53,409,587 53,409,587 | raw | 2023-12-14 | ||
| PE6.raw | 47,352,980 47,352,980 | raw | 2023-12-14 | ||
| PE7.raw | 55,456,857 55,456,857 | raw | 2023-12-14 | ||
| PE8.raw | 52,206,893 52,206,893 | raw | 2023-12-14 | ||
| PE9.raw | 59,144,072 59,144,072 | raw | 2023-12-14 | ||
| PTL1.raw | 56,191,155 56,191,155 | raw | 2023-12-14 | ||
| PTL10.raw | 47,799,567 47,799,567 | raw | 2023-12-14 | ||
| PTL11.raw | 55,998,336 55,998,336 | raw | 2023-12-14 | ||
| PTL12.raw | 54,833,634 54,833,634 | raw | 2023-12-14 | ||
| PTL13.raw | 53,901,692 53,901,692 | raw | 2023-12-14 | ||
| PTL14.raw | 55,071,358 55,071,358 | raw | 2023-12-14 | ||
| PTL15.raw | 47,740,327 47,740,327 | raw | 2023-12-14 | ||
| PTL2.raw | 54,365,682 54,365,682 | raw | 2023-12-14 | ||
| PTL3.raw | 56,211,315 56,211,315 | raw | 2023-12-14 | ||
| PTL4.raw | 55,130,839 55,130,839 | raw | 2023-12-14 | ||
| PTL5.raw | 46,748,893 46,748,893 | raw | 2023-12-14 | ||
| PTL6.raw | 54,966,108 54,966,108 | raw | 2023-12-14 | ||
| PTL7.raw | 47,116,009 47,116,009 | raw | 2023-12-14 | ||
| PTL8.raw | 54,366,241 54,366,241 | raw | 2023-12-14 | ||
| PTL9.raw | 55,686,808 55,686,808 | raw | 2023-12-14 |
KMAP
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대사체 데이터