BioProject
노화 마우스 지방조직 대사체 분석
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AccessionKAP240727
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Submission date2024-05-21
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Technique type
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Mass spectrometry (MS) |
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Assay Type
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Chromatography (MS-based) |
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Species
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Mus musculus |
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샘플 유형
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Model organism or animal |
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추출 프로토콜
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20 mg frozen tissue was weighed and placed in extraction solution (600 µl methanol:chloroform at 66:33 (v/v)) and homogenized at 2,823g for 20 s twice. Homogenized samples were further sonicated for 15 min and 200 μl chloroform and water were separately added. After 1 min of vortexing, extracts were stored at 4 °C for 10 min, followed by centrifugation at 4 °C, 18,213g for 20 min. Upper aqueous supernatant and lower lipophilic solution were separately transferred to clean microcentrifuge tubes and dried using a speed vac evaporator and nitrogen evaporator, respectively. Powdered samples were stored at −80 °C till LC–MS analysis. On the same day as LC–MS analysis, dried polar metabolites were immediately re-dissolved in water:acetonitrile at 25:75 solution for polar metabolite metabolomics. Similarly, dried lipid spices were re-dissolved in isopropanol:acetonitrile at 10:90 (v/v) for lipidomics.
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크로마토그래피 프로토콜
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LC separations were carried out on an Acquity UPLC BEH C18 column (Waters) by UPLS system (Waters). Column temperature and flow rate were set to 35 °C and 0.35 ml min−1, respectively. The mobile phase A was 10 mM ammonium acetate in acetonitrile:water at 40:60 (v/v) and the mobile phase B was 10 mM ammonium acetate in acetonitrile:isopropanol at 10:90 (v/v). The gradient elution started at 60% A:40% B and B was increased linearly to 65% at 5 min, 70% at 12 min and 99% at 15 min. Then, 1% A:99% B was kept for 2 min and column was equilibrated for 3 min. Pooled QC samples were also measured to check data. For each sample, 5 μl were injected with a partial loop mode for positive and negative ionization polarity modes separately from auto-samplers at 4 °C.
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질량분석 프로토콜
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MS analysis was performed on a triple TOF 5600 MS/MS System (AB Sciex). Lipid species were analyzed in the range m/z 50–1,500. The following specific settings were used: ion spray voltage, 5,500 V; source temperature, 500 °C; nebulizer gas pressure, 60 psi; drying gas pressure, 60 psi; and curtain gas pressure, 30 psi.
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프로젝트의 영문 제목
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Metabolic profiling of adipose tissues from aged mice | ||||||||||||
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프로젝트의 국문 제목
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노화 마우스 지방조직 대사체 분석 | ||||||||||||
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프로젝트의 영문 설명
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Adipose tissues are central in controlling metabolic homeostasis and failure in their preservation is associated with age-related metabolic disorders. The exact role of mature adipocytes in this phenomenon remains elusive. Here we describe the role of adipose branched-chain amino acid (BCAA) catabolism in this process. We found that adipocyte-specific Crtc2 knockout protected mice from age-associated metabolic decline. Multiomics analysis revealed that BCAA catabolism was impaired in aged visceral adipose tissues, leading to the activation of mechanistic target of rapamycin complex (mTORC1) signaling and the resultant cellular senescence, which was restored by Crtc2 knockout in adipocytes. | ||||||||||||
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프로젝트의 국문 설명
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지방 조직은 대사 항상성을 조절하는 데 핵심적이며, 이는 노화 관련 대사 장애와 연관되어 있습니다. 이에 대한 성숙한 지방세포의 정확한 역할은 아직 파악되지 않았으며, 이에 본 연구에서는 관련 대사에서 지방 분지 사슬 아미노산(BCAA)의 이화작용의 역할을 설명합니다. 본 연구에서 지방세포 특이적인 Crtc2 녹아웃 마우스가 노화 관련 대사 감소로부터 보호된다는 것을 확인했습니다. 멀티오믹스 분석을 통해, BCAA 이화작용이 노화된 내장 지방 조직에서 감소하며, 이는 mTORC1 및 하위 세포 노화 과정에 대한 메커니즘 타겟의 활성화를 일으키는 것으로 나타났습니다. 또한 해당 기작은 Crtc2가 녹아웃된 지방세포에서는 회복되었습니다. | ||||||||||||
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Date and Organization
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Grant
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Publication and Patent
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| File Name | Size | Type | Published | Download | |
|---|---|---|---|---|---|
| neg_Sample01.wiff.zip | 72,909,097 72,909,097 | zip | 2024-05-21 | ||
| neg_Sample02.wiff.zip | 72,849,927 72,849,927 | zip | 2024-05-21 | ||
| neg_Sample03.wiff.zip | 72,914,218 72,914,218 | zip | 2024-05-21 | ||
| neg_Sample04.wiff.zip | 72,300,850 72,300,850 | zip | 2024-05-21 | ||
| neg_Sample05.wiff.zip | 72,404,484 72,404,484 | zip | 2024-05-21 | ||
| neg_Sample06.wiff.zip | 72,099,543 72,099,543 | zip | 2024-05-21 | ||
| neg_Sample07.wiff.zip | 72,489,810 72,489,810 | zip | 2024-05-21 | ||
| neg_Sample08.wiff.zip | 73,304,069 73,304,069 | zip | 2024-05-21 | ||
| neg_Sample09.wiff.zip | 73,625,206 73,625,206 | zip | 2024-05-21 | ||
| neg_Sample10.wiff.zip | 73,641,800 73,641,800 | zip | 2024-05-21 | ||
| neg_Sample11.wiff.zip | 72,848,831 72,848,831 | zip | 2024-05-21 | ||
| neg_Sample12.wiff.zip | 72,190,896 72,190,896 | zip | 2024-05-21 | ||
| neg_Sample13.wiff.zip | 72,172,592 72,172,592 | zip | 2024-05-21 | ||
| neg_Sample14.wiff.zip | 71,954,775 71,954,775 | zip | 2024-05-21 | ||
| neg_Sample15.wiff.zip | 73,073,708 73,073,708 | zip | 2024-05-21 | ||
| neg_Sample16.wiff.zip | 73,029,835 73,029,835 | zip | 2024-05-21 | ||
| neg_Sample17.wiff.zip | 73,093,335 73,093,335 | zip | 2024-05-21 | ||
| neg_Sample18.wiff.zip | 73,002,100 73,002,100 | zip | 2024-05-21 | ||
| neg_Sample19.wiff.zip | 72,362,836 72,362,836 | zip | 2024-05-21 | ||
| neg_Sample20.wiff.zip | 72,948,389 72,948,389 | zip | 2024-05-21 | ||
| neg_Sample21.wiff.zip | 72,910,129 72,910,129 | zip | 2024-05-21 | ||
| neg_Sample22.wiff.zip | 72,852,044 72,852,044 | zip | 2024-05-21 | ||
| neg_Sample23.wiff.zip | 72,855,413 72,855,413 | zip | 2024-05-21 | ||
| neg_Sample24.wiff.zip | 72,313,508 72,313,508 | zip | 2024-05-21 | ||
| neg_Sample25.wiff.zip | 73,285,473 73,285,473 | zip | 2024-05-21 | ||
| neg_Sample26.wiff.zip | 72,561,725 72,561,725 | zip | 2024-05-21 | ||
| neg_Sample27.wiff.zip | 72,879,436 72,879,436 | zip | 2024-05-21 | ||
| pos_Sample01.wiff.zip | 73,970,347 73,970,347 | zip | 2024-05-21 | ||
| pos_Sample02.wiff.zip | 72,120,756 72,120,756 | zip | 2024-05-21 | ||
| pos_Sample03.wiff.zip | 72,139,967 72,139,967 | zip | 2024-05-21 | ||
| pos_Sample04.wiff.zip | 71,621,712 71,621,712 | zip | 2024-05-21 | ||
| pos_Sample05.wiff.zip | 72,521,058 72,521,058 | zip | 2024-05-21 | ||
| pos_Sample06.wiff.zip | 72,857,702 72,857,702 | zip | 2024-05-21 | ||
| pos_Sample07.wiff.zip | 72,841,029 72,841,029 | zip | 2024-05-21 | ||
| pos_Sample08.wiff.zip | 72,766,220 72,766,220 | zip | 2024-05-21 | ||
| pos_Sample09.wiff.zip | 72,534,771 72,534,771 | zip | 2024-05-21 | ||
| pos_Sample10.wiff.zip | 71,918,943 71,918,943 | zip | 2024-05-21 | ||
| pos_Sample11.wiff.zip | 72,408,486 72,408,486 | zip | 2024-05-21 | ||
| pos_Sample12.wiff.zip | 70,516,736 70,516,736 | zip | 2024-05-21 | ||
| pos_Sample13.wiff.zip | 73,303,322 73,303,322 | zip | 2024-05-21 | ||
| pos_Sample14.wiff.zip | 73,170,490 73,170,490 | zip | 2024-05-21 | ||
| pos_Sample15.wiff.zip | 72,904,429 72,904,429 | zip | 2024-05-21 | ||
| pos_Sample16.wiff.zip | 73,435,465 73,435,465 | zip | 2024-05-21 | ||
| pos_Sample17.wiff.zip | 72,369,170 72,369,170 | zip | 2024-05-21 | ||
| pos_Sample18.wiff.zip | 72,422,306 72,422,306 | zip | 2024-05-21 | ||
| pos_Sample19.wiff.zip | 73,858,549 73,858,549 | zip | 2024-05-21 | ||
| pos_Sample20.wiff.zip | 73,623,926 73,623,926 | zip | 2024-05-21 | ||
| pos_Sample21.wiff.zip | 72,552,153 72,552,153 | zip | 2024-05-21 | ||
| pos_Sample22.wiff.zip | 72,603,945 72,603,945 | zip | 2024-05-21 | ||
| pos_Sample23.wiff.zip | 72,604,606 72,604,606 | zip | 2024-05-21 | ||
| pos_Sample24.wiff.zip | 72,381,811 72,381,811 | zip | 2024-05-21 | ||
| pos_Sample25.wiff.zip | 72,743,738 72,743,738 | zip | 2024-05-21 | ||
| pos_Sample26.wiff.zip | 72,747,881 72,747,881 | zip | 2024-05-21 | ||
| pos_Sample27.wiff.zip | 72,907,504 72,907,504 | zip | 2024-05-21 |
KMAP
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