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Run
KAR24092868
Experiment Title
Illumina NovaSeq 6000 paired Sequencing of pair (PRJDB37377)

Common Fields
Common Fields - BioProject, Data Type, Submission date, Access, Release date, Runs
Experiment
Accession KAE24092868
라이브러리 name Col_Treat_1DAT_2
플랫폼 ILLUMINA
시퀀싱 기법 RNA-Seq
라이브러리 출처 TRANSCRIPTOMIC
라이브러리 선택 방법 cDNA
라이브러리 레이아웃 paired
BioSample
Accession KAS24117308
샘플명 Col_Treat_1DAT_2
생명체 명 Arabidopsis thaliana
BioProject
Accession KAP241507
프로젝트의 영문 제목 WSS1A, a DNA-Protein Crosslink Repair Protease, Negatively Regulates Leaf Senescence via Liquid-Liquid Phase Separation and SUMOylation in Arabidopsis

Run Metadata
Primary
(1 cases)
Run Metadata - RUN ID, EXPERIMENT ID, BIOSAMPLE ID, LIBRARY IDENTIFIER, TYPE OF PRIMARY DATA FILE, NAME OF PRIMARY DATA FILE
file type
location
file name
bytes
total sequences (bp)
sequence lengh (bp) Release date Access type
fastq KBDS-KRA 1,371,528,418 1,371,528,418 2025-04-25 PUBLIC

library_construction_protocol
Leaves detached from Col plants at 12 DAE were floated on 3 mM MES (pH 5.8) with or without 30 micrometer cis-Pt and incubated at 22 degree C under 16-h light/8-h dark photoperiod for 1 day. The mRNA-seq experiments were performed in two independent biological replicates per treatment (0 and 30 micrometer cis-Pt). Total RNA was isolated from the leaves using QIAzol (QIAGEN, Germany) and its integrity was assessed using Agilent Technologies 2100 Bioanalyzer (Agilent Technologies, USA). Total RNA samples with an RNA integrity number (RIN) greater than 7.8 were used for mRNA-seq analysis. Poly(A) mRNA was isolated from the total RNA (2 microgram) and fragmented using Illumina TruSeq Stranded mRNA LT Sample Prep Kit (Illumina, USA) with poly-T oligo-attached magnetic beads. After the cDNA synthesis from the RNA fragments using Superscript II reverse transcriptase (InvitrogenTM, USA), strand-specific cDNA libraries were generated by adaptor ligation and sequenced by Illumina NovaSeq 6000 system (Illumina, USA), according to the Illumina Directional RNA-Seq protocol.

Analysis
(0 cases)
Run Metadata - RUN ID, EXPERIMENT ID, BIOSAMPLE ID, LIBRARY IDENTIFIER, TYPE OF PRIMARY DATA FILE, NAME OF PRIMARY DATA FILE
analysis type
file type
location
File name
bytes
Release date Access type
No Run data.

Reference
(0 cases)
Run Metadata - RUN ID, EXPERIMENT ID, BIOSAMPLE ID, LIBRARY IDENTIFIER, TYPE OF PRIMARY DATA FILE, NAME OF PRIMARY DATA FILE
reference type RefSeq accession ID File name
No Run data.