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Run
KAR21051370
Experiment Title
Illumina NovaSeq 6000 paired Sequencing of KAS20000436 (PRJDB19217)
Common Fields
Common Fields - BioProject, Data Type, Submission date, Access, Release date, Runs
Experiment
Accession KAE21051370
library name Huh7_HiC_rep2_Hi-C
platform ILLUMINA
strategy RAD-Seq
source GENOMIC
selection other
layout paired
BioSample
Accession KAS20000436
Sample name Huh7_HiC_rep2
Organism Homo sapiens
BioProject
Accession KAP200004
Project title Discovery of 3D-nucleome biomarker in liver/breast cancer patients
Run Metadata
Primary
(1 cases)
Run Metadata - RUN ID, EXPERIMENT ID, BIOSAMPLE ID, LIBRARY IDENTIFIER, TYPE OF PRIMARY DATA FILE, NAME OF PRIMARY DATA FILE
file type
location
file name
bytes
total sequences (bp)
sequence lengh (bp) Release date Access type
fastq KBDS-KRA
READ_1.fq.gz | READ_2.fq.gz
52,871,369,064 52,871,369,064 2021-12-03 PUBLIC
library_construction_protocol
Total 2,000,000 cells were crosslinked using 36.5% formaldehyde. In situ Hi-C was performed using the Arima-HiC kit Arima Genomics Inc and sequenced using a Illumina Novaseq 6000 150bp with the paired method.
Analysis
(0 cases)
Run Metadata - RUN ID, EXPERIMENT ID, BIOSAMPLE ID, LIBRARY IDENTIFIER, TYPE OF PRIMARY DATA FILE, NAME OF PRIMARY DATA FILE
analysis type
file type
location
File name
bytes
Release date Access type
No Run data.
Reference
(0 cases)
Run Metadata - RUN ID, EXPERIMENT ID, BIOSAMPLE ID, LIBRARY IDENTIFIER, TYPE OF PRIMARY DATA FILE, NAME OF PRIMARY DATA FILE
reference type RefSeq accession ID File name
No Run data.