Shortcuts to body


Experiment
KAE24092865
Experiment Title
Illumina NovaSeq 6000 paired Sequencing of pair (DRX857030)

Common Fields
Common Fields - BioProject, Strategy, Source, Selection, Layout, Instrument, Submission date, Experiments
Organism
Arabidopsis thaliana | 3702
Submission date
2025-04-29

Accession
Accession - RUNs, BIOSAMPLEs
Runs
All runs [4]
Experiments
All experiments [4]
BioSamples
All samples [4]
BioProject
KAP241507

Library
Common Fields - BioProject, Strategy, Source, Selection, Layout, Instrument, Submission date, Experiments
Library name
Col_Mock_1DAT_1
Instrument model
Illumina NovaSeq 6000
Strategy
RNA-Seq
Source
TRANSCRIPTOMIC
Selection
cDNA
Layout
paired
Construction protocol
Leaves detached from Col plants at 12 DAE were floated on 3 mM MES (pH 5.8) with or without 30 micrometer cis-Pt and incubated at 22 degree C under 16-h light/8-h dark photoperiod for 1 day. The mRNA-seq experiments were performed in two independent biological replicates per treatment (0 and 30 micrometer cis-Pt). Total RNA was isolated from the leaves using QIAzol (QIAGEN, Germany) and its integrity was assessed using Agilent Technologies 2100 Bioanalyzer (Agilent Technologies, USA). Total RNA samples with an RNA integrity number (RIN) greater than 7.8 were used for mRNA-seq analysis. Poly(A) mRNA was isolated from the total RNA (2 microgram) and fragmented using Illumina TruSeq Stranded mRNA LT Sample Prep Kit (Illumina, USA) with poly-T oligo-attached magnetic beads. After the cDNA synthesis from the RNA fragments using Superscript II reverse transcriptase (InvitrogenTM, USA), strand-specific cDNA libraries were generated by adaptor ligation and sequenced by Illumina NovaSeq 6000 system (Illumina, USA), according to the Illumina Directional RNA-Seq protocol.

Runs
file 목록
Run File Name Size Type Published Download
KRA: KAR24092865 , DRA: DRR879123 Mock_1DAT_1_R1.fastq.gz 757,497,283 757,497,283 fastq 2025-04-25
KRA: KAR24092865 , DRA: DRR879123 Mock_1DAT_1_R2.fastq.gz 781,454,178 781,454,178 fastq 2025-04-25