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Experiment

KAE24062572

Experiment Title

Illumina HiSeq 2500 paired-end Sequencing of PDAC04_T

This study aims to demonstrate the genomic discrepancies between pancreatic ductal adenocarcinoma (PDAC) patient tissues and model tissues during the establishment of patient-derived xenograft (PDX). We conducted whole exome sequencing and RNA sequencing on tissue samples from PDAC patients and their corresponding PDX tissues. As a result, we identified genetic alterations accumulated during PDX establishment and defined PDX model specific subtypes based on changes in gene expression profiles. This study is expected to enhance the utility of PDX models in achieving precision medicine for PDAC.

Common Fields

Common Fields - BioProject, Strategy, Source, Selection, Layout, Instrument, Submission date, Experiments
Organism	Homo sapiens \| 9606
Submission date	2024-03-21

Accession

Accession - RUNs, BIOSAMPLEs
Runs	All runs [171]
Experiments	All experiments [171]
BioSamples	All samples [105]
BioProject	KAP240672

Library

Common Fields - BioProject, Strategy, Source, Selection, Layout, Instrument, Submission date, Experiments
Library name	PDAC04_Tumor_RNA-Seq
Instrument model	Illumina HiSeq 2500
Strategy	RNA-Seq
Source	TRANSCRIPTOMIC
Selection	CAGE
Layout	paired
Construction protocol	RNA sequencing library was constructed using TruSeq Stranded Total RNA (including the Ribo-Zero Gold kit (Illumina Inc.)).

The KRA run(s) below contain human sequence

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file 선택	Run	File Name	Size	Type	Published	Download
	KRA: KAR24062572	PDAC04_R_T_R2.fastq.gz	5,536,413,597 5,536,413,597	fastq	2024-03-20
	KRA: KAR24062572	PDAC04_R_T_R1.fastq.gz	5,511,504,866 5,511,504,866	fastq	2024-03-20

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