Genome
Lederbergia lenta 3738T, Contig level genome assembly
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AccessionKAAAAFP01
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Submission date2025-03-11
Project Detail
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BioProject
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KAP241475 |
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Project title
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Genome sequence assemblies of microbial strains collected by Korean Collection for Type Cultures (KCTC)
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Project description
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The genome sequence assembly results using the Illumina HiSeq 2000 sequencing data of the microorganisms (BioProject KAP241464). The methods for data QC, assembly, and annotation are identical to those of BioProject KAP241424, so please refer to the README file of that BioProject.
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Name of submitter
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Jeong Haeyoung
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BioSample
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BioSample Accession ID
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KAS24112006 |
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BioSample name
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3738T
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Organism
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Lederbergia lenta
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NCBItaxonomyID
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1467
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Strain
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KCTC 3738
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Breed
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Cultivar
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Isolate
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Ecotype
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Host
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Lab Host
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Isolation Source
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soil
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Sample Division
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Bacteria
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DataSet
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Name of submitter's organization
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Korea Research Institute of Bioscience and Biotechnology
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Department of submitter
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Korea Bioinformation Center (KOBIC)
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Country of submitter
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Republic of Korea
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Street address
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87 Gwahak-ro
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City
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Yuseong-gu
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State / Province / Region
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Daejeon
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Zip Code (Postal Code)
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34103
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Contact person information
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Publication status
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Unpublished
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Publication
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Reference title
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Confirm update of existing submission
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No
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Existing KNA Accession ID
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Sequence Authors
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Sample processing protocol
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Data processing protocol
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Supplementary information
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Release Protocol?
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No
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Confirm full genome
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Yes (even for draft genomes or if a prokaryotic genome assembly may not incude plasmids)
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Description for subset of the genome
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Assembly state
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One or more chromosomes are still in multiple pieces and/or some sequences are not assembled into chromosomes
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Assembly level
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Contig
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Confirm de novo assembly
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Yes
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Reference assembly accession ID
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Confirm final version
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Yes
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Locus Tag Prefix
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Reference assembly accession
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Did you submit KRA data for this Genome submission?
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Yes
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KRA Accession ID
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Assembly date
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Sequencing platform - KRA Run
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Sequencing platform
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Sequencing platform
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Assembly method
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Haplotype phasing method
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Assembly name
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hasN
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No
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Did you randomly merge the sequences into a single sequence?
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No
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Do any of the N's represents gaps of completely unknown size gaps?
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Appropriate minimum number of Ns in a row (0-10) that represents a gap
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Representataion of Unknown Gaps
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What type of evidence was used to assert linkage across the assembly gaps?
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Annotation file format
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GFF
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Total length
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4339568
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Total contigs
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23
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Scaffolds or chromosomes Total length
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0
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Scaffolds or chromosomes Total contigs
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0
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Sequences belong to?
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Chromosome
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Organelle
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Plasmid
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Nucleotide Accession
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| File Name | Size | Type | Published | Download | |
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| 3738T.fasta | 4,412,553 4,412,553 | fasta | 2025-03-10 | ||
| 3738T.gff | 7,715,032 7,715,032 | gff | 2025-03-10 |
Contigs
Showing 1-10 of 23
| Accession | Title | Sequence Id | GC% | Length |
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| KAAAAFP010000001 |
Lederbergia lenta 3738T, Lederbergia lenta 1 length=1876091 depth=0.97x
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1 length=1876091 depth=0.97x
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36.32% | 1,876,091 bp |
| KAAAAFP010000002 |
Lederbergia lenta 3738T, Lederbergia lenta 2 length=912960 depth=1.16x
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2 length=912960 depth=1.16x
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36.93% | 912,960 bp |
| KAAAAFP010000003 |
Lederbergia lenta 3738T, Lederbergia lenta 3 length=519640 depth=1.19x
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3 length=519640 depth=1.19x
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37.03% | 519,640 bp |
| KAAAAFP010000004 |
Lederbergia lenta 3738T, Lederbergia lenta 4 length=335658 depth=1.00x
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4 length=335658 depth=1.00x
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35.66% | 335,658 bp |
| KAAAAFP010000005 |
Lederbergia lenta 3738T, Lederbergia lenta 5 length=160784 depth=1.20x
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5 length=160784 depth=1.20x
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35.73% | 160,784 bp |
| KAAAAFP010000006 |
Lederbergia lenta 3738T, Lederbergia lenta 6 length=124770 depth=1.14x
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6 length=124770 depth=1.14x
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36.42% | 124,770 bp |
| KAAAAFP010000007 |
Lederbergia lenta 3738T, Lederbergia lenta 7 length=79292 depth=1.07x
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7 length=79292 depth=1.07x
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36.63% | 79,292 bp |
| KAAAAFP010000008 |
Lederbergia lenta 3738T, Lederbergia lenta 8 length=77732 depth=1.23x
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8 length=77732 depth=1.23x
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36.70% | 77,732 bp |
| KAAAAFP010000009 |
Lederbergia lenta 3738T, Lederbergia lenta 9 length=73493 depth=1.15x
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9 length=73493 depth=1.15x
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36.18% | 73,493 bp |
| KAAAAFP010000010 |
Lederbergia lenta 3738T, Lederbergia lenta 10 length=68212 depth=1.34x
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10 length=68212 depth=1.34x
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37.64% | 68,212 bp |