유전체
Cytobacillus firmus 3626T, Contig level genome assembly
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AccessionKAAAAFO01
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Submission date2025-03-11
Project Detail
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BioProject
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KAP241475 |
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프로젝트의 영문 제목
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Genome sequence assemblies of microbial strains collected by Korean Collection for Type Cultures (KCTC)
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프로젝트의 영문 설명
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The genome sequence assembly results using the Illumina HiSeq 2000 sequencing data of the microorganisms (BioProject KAP241464). The methods for data QC, assembly, and annotation are identical to those of BioProject KAP241424, so please refer to the README file of that BioProject.
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등록자의 영문 이름
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Jeong Haeyoung
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BioSample
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BioSample Accession ID
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KAS24112005 |
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BioSample name
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3626T
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Organism
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Cytobacillus firmus
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NCBItaxonomyID
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1399
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Strain
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KCTC 3626
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Breed
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Cultivar
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Isolate
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Ecotype
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Host
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Lab Host
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Isolation Source
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Not applicable
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Sample Division
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Bacteria
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DataSet
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Name of submitter's organization
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Korea Research Institute of Bioscience and Biotechnology
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Department of submitter
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Korea Bioinformation Center (KOBIC)
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Country of submitter
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Republic of Korea
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Street address
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86 Gwahak-ro
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City
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Yuseong-gu
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State / Province / Region
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Daejeon
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Zip Code (Postal Code)
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34102
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Contact person information
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Publication status
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Unpublished
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Publication
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Reference title
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Confirm update of existing submission
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No
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Existing KNA Accession ID
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Sequence Authors
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Sample processing protocol
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Data processing protocol
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Supplementary information
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Release Protocol?
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No
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Confirm full genome
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Yes (even for draft genomes or if a prokaryotic genome assembly may not incude plasmids)
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Description for subset of the genome
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Assembly state
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One or more chromosomes are still in multiple pieces and/or some sequences are not assembled into chromosomes
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Assembly level
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Contig
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Confirm de novo assembly
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Yes
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Reference assembly accession ID
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Confirm final version
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Yes
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Locus Tag Prefix
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Reference assembly accession
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Did you submit KRA data for this Genome submission?
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Yes
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KRA Accession ID
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Assembly date
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Sequencing platform - KRA Run
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Sequencing platform
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Sequencing platform
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Assembly method
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Haplotype phasing method
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Assembly name
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hasN
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No
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Did you randomly merge the sequences into a single sequence?
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No
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Do any of the N's represents gaps of completely unknown size gaps?
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Appropriate minimum number of Ns in a row (0-10) that represents a gap
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Representataion of Unknown Gaps
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What type of evidence was used to assert linkage across the assembly gaps?
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Annotation file format
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GFF
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Total length
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4442504
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Total contigs
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264
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Scaffolds or chromosomes Total length
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0
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Scaffolds or chromosomes Total contigs
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0
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Sequences belong to?
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Chromosome
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Organelle
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Plasmid
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Nucleotide Accession
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| File Name | Size | Type | Published | Download | |
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| 3626T.fasta | 4,524,224 4,524,224 | fasta | 2025-03-10 | ||
| 3626T.gff | 7,979,218 7,979,218 | gff | 2025-03-10 |
Contigs
Showing 1-10 of 264
| Accession | Title | Sequence Id | GC% | Length |
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| KAAAAFO010000001 |
Cytobacillus firmus 3626T, Cytobacillus firmus 1 length=238994 depth=0.94x
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1 length=238994 depth=0.94x
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41.92% | 238,994 bp |
| KAAAAFO010000002 |
Cytobacillus firmus 3626T, Cytobacillus firmus 2 length=197230 depth=1.05x
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2 length=197230 depth=1.05x
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41.38% | 197,230 bp |
| KAAAAFO010000003 |
Cytobacillus firmus 3626T, Cytobacillus firmus 3 length=188151 depth=1.00x
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3 length=188151 depth=1.00x
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44.03% | 188,151 bp |
| KAAAAFO010000004 |
Cytobacillus firmus 3626T, Cytobacillus firmus 4 length=168282 depth=0.93x
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4 length=168282 depth=0.93x
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41.38% | 168,282 bp |
| KAAAAFO010000005 |
Cytobacillus firmus 3626T, Cytobacillus firmus 5 length=120883 depth=1.22x
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5 length=120883 depth=1.22x
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40.31% | 120,883 bp |
| KAAAAFO010000006 |
Cytobacillus firmus 3626T, Cytobacillus firmus 6 length=108492 depth=0.89x
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6 length=108492 depth=0.89x
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42.38% | 108,492 bp |
| KAAAAFO010000007 |
Cytobacillus firmus 3626T, Cytobacillus firmus 7 length=102003 depth=1.01x
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7 length=102003 depth=1.01x
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41.80% | 102,003 bp |
| KAAAAFO010000008 |
Cytobacillus firmus 3626T, Cytobacillus firmus 8 length=98209 depth=1.05x
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8 length=98209 depth=1.05x
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40.24% | 98,209 bp |
| KAAAAFO010000009 |
Cytobacillus firmus 3626T, Cytobacillus firmus 9 length=90239 depth=0.92x
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9 length=90239 depth=0.92x
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41.82% | 90,239 bp |
| KAAAAFO010000010 |
Cytobacillus firmus 3626T, Cytobacillus firmus 10 length=89175 depth=0.92x
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10 length=89175 depth=0.92x
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41.62% | 89,175 bp |