유전체
Paenibacillus validus 3859T, Contig level genome assembly
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AccessionKAAAAFN01
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Submission date2025-03-11
Project Detail
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BioProject
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KAP241475 |
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프로젝트의 영문 제목
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Genome sequence assemblies of microbial strains collected by Korean Collection for Type Cultures (KCTC)
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프로젝트의 영문 설명
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The genome sequence assembly results using the Illumina HiSeq 2000 sequencing data of the microorganisms (BioProject KAP241464). The methods for data QC, assembly, and annotation are identical to those of BioProject KAP241424, so please refer to the README file of that BioProject.
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등록자의 영문 이름
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Jeong Haeyoung
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BioSample
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BioSample Accession ID
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KAS24112004 |
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BioSample name
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3859T
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Organism
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Paenibacillus validus
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NCBItaxonomyID
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44253
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Strain
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KCTC 3859
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Breed
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Cultivar
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Isolate
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Ecotype
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Host
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Lab Host
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Isolation Source
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soil
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Sample Division
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Bacteria
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DataSet
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Name of submitter's organization
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Korea Research Institute of Bioscience and Biotechnology
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Department of submitter
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Korea Bioinformation Center (KOBIC)
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Country of submitter
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Republic of Korea
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Street address
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85 Gwahak-ro
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City
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Yuseong-gu
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State / Province / Region
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Daejeon
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Zip Code (Postal Code)
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34101
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Contact person information
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Publication status
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Unpublished
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Publication
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Reference title
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Confirm update of existing submission
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No
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Existing KNA Accession ID
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Sequence Authors
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Sample processing protocol
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Data processing protocol
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Supplementary information
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Release Protocol?
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No
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Confirm full genome
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Yes (even for draft genomes or if a prokaryotic genome assembly may not incude plasmids)
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Description for subset of the genome
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Assembly state
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One or more chromosomes are still in multiple pieces and/or some sequences are not assembled into chromosomes
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Assembly level
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Contig
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Confirm de novo assembly
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Yes
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Reference assembly accession ID
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Confirm final version
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Yes
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Locus Tag Prefix
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Reference assembly accession
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Did you submit KRA data for this Genome submission?
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Yes
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KRA Accession ID
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Assembly date
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Sequencing platform - KRA Run
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Sequencing platform
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Sequencing platform
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Assembly method
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Haplotype phasing method
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Assembly name
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hasN
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No
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Did you randomly merge the sequences into a single sequence?
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No
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Do any of the N's represents gaps of completely unknown size gaps?
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Appropriate minimum number of Ns in a row (0-10) that represents a gap
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Representataion of Unknown Gaps
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What type of evidence was used to assert linkage across the assembly gaps?
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Annotation file format
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GFF
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Total length
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5547727
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Total contigs
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132
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Scaffolds or chromosomes Total length
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0
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Scaffolds or chromosomes Total contigs
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0
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Sequences belong to?
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Chromosome
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Organelle
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Plasmid
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Nucleotide Accession
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| File Name | Size | Type | Published | Download | |
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| 3859T.fasta | 5,644,045 5,644,045 | fasta | 2025-03-10 | ||
| 3859T.gff | 9,940,951 9,940,951 | gff | 2025-03-10 |
Contigs
Showing 1-10 of 132
| Accession | Title | Sequence Id | GC% | Length |
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| KAAAAFN010000001 |
Paenibacillus validus 3859T, Paenibacillus validus 1 length=420601 depth=1.00x
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1 length=420601 depth=1.00x
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51.80% | 420,601 bp |
| KAAAAFN010000002 |
Paenibacillus validus 3859T, Paenibacillus validus 2 length=245466 depth=1.05x
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2 length=245466 depth=1.05x
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53.19% | 245,466 bp |
| KAAAAFN010000003 |
Paenibacillus validus 3859T, Paenibacillus validus 3 length=232773 depth=1.00x
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3 length=232773 depth=1.00x
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53.30% | 232,773 bp |
| KAAAAFN010000004 |
Paenibacillus validus 3859T, Paenibacillus validus 4 length=209807 depth=0.92x
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4 length=209807 depth=0.92x
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53.23% | 209,807 bp |
| KAAAAFN010000005 |
Paenibacillus validus 3859T, Paenibacillus validus 5 length=196435 depth=1.02x
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5 length=196435 depth=1.02x
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53.39% | 196,435 bp |
| KAAAAFN010000006 |
Paenibacillus validus 3859T, Paenibacillus validus 6 length=181792 depth=1.01x
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6 length=181792 depth=1.01x
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52.65% | 181,792 bp |
| KAAAAFN010000007 |
Paenibacillus validus 3859T, Paenibacillus validus 7 length=180824 depth=0.99x
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7 length=180824 depth=0.99x
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52.34% | 180,824 bp |
| KAAAAFN010000008 |
Paenibacillus validus 3859T, Paenibacillus validus 8 length=179078 depth=1.05x
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8 length=179078 depth=1.05x
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52.87% | 179,078 bp |
| KAAAAFN010000009 |
Paenibacillus validus 3859T, Paenibacillus validus 9 length=178075 depth=0.94x
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9 length=178075 depth=0.94x
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53.14% | 178,075 bp |
| KAAAAFN010000010 |
Paenibacillus validus 3859T, Paenibacillus validus 10 length=169382 depth=1.09x
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10 length=169382 depth=1.09x
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52.81% | 169,382 bp |