유전체
Heyndrickxia oleronia 3776T, Contig level genome assembly
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AccessionKAAAAFM01
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Submission date2025-03-11
Project Detail
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BioProject
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KAP241475 |
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프로젝트의 영문 제목
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Genome sequence assemblies of microbial strains collected by Korean Collection for Type Cultures (KCTC)
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프로젝트의 영문 설명
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The genome sequence assembly results using the Illumina HiSeq 2000 sequencing data of the microorganisms (BioProject KAP241464). The methods for data QC, assembly, and annotation are identical to those of BioProject KAP241424, so please refer to the README file of that BioProject.
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등록자의 영문 이름
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Jeong Haeyoung
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BioSample
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BioSample Accession ID
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KAS24112003 |
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BioSample name
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3776T
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Organism
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Heyndrickxia oleronia
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NCBItaxonomyID
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38875
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Strain
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KCTC 3776
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Breed
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Cultivar
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Isolate
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Ecotype
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Host
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Reticulitermes santonensis (termite)
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Lab Host
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Isolation Source
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termite gut
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Sample Division
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Bacteria
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DataSet
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Name of submitter's organization
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Korea Research Institute of Bioscience and Biotechnology
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Department of submitter
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Korea Bioinformation Center (KOBIC)
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Country of submitter
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Republic of Korea
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Street address
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84 Gwahak-ro
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City
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Yuseong-gu
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State / Province / Region
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Daejeon
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Zip Code (Postal Code)
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34100
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Contact person information
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Publication status
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Unpublished
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Publication
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Reference title
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Confirm update of existing submission
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No
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Existing KNA Accession ID
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Sequence Authors
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Sample processing protocol
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Data processing protocol
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Supplementary information
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Release Protocol?
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No
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Confirm full genome
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Yes (even for draft genomes or if a prokaryotic genome assembly may not incude plasmids)
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Description for subset of the genome
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Assembly state
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One or more chromosomes are still in multiple pieces and/or some sequences are not assembled into chromosomes
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Assembly level
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Contig
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Confirm de novo assembly
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Yes
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Reference assembly accession ID
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Confirm final version
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Yes
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Locus Tag Prefix
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Reference assembly accession
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Did you submit KRA data for this Genome submission?
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Yes
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KRA Accession ID
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Assembly date
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Sequencing platform - KRA Run
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Sequencing platform
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Sequencing platform
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Assembly method
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Haplotype phasing method
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Assembly name
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hasN
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No
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Did you randomly merge the sequences into a single sequence?
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No
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Do any of the N's represents gaps of completely unknown size gaps?
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Appropriate minimum number of Ns in a row (0-10) that represents a gap
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Representataion of Unknown Gaps
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What type of evidence was used to assert linkage across the assembly gaps?
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Annotation file format
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GFF
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Total length
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5080136
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Total contigs
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112
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Scaffolds or chromosomes Total length
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0
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Scaffolds or chromosomes Total contigs
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0
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Sequences belong to?
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Chromosome
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Organelle
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Plasmid
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Nucleotide Accession
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| File Name | Size | Type | Published | Download | |
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| 3776T.fasta | 5,168,044 5,168,044 | fasta | 2025-03-10 | ||
| 3776T.gff | 9,066,382 9,066,382 | gff | 2025-03-10 |
Contigs
Showing 1-10 of 112
| Accession | Title | Sequence Id | GC% | Length |
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| KAAAAFM010000001 |
Heyndrickxia oleronia 3776T, Heyndrickxia oleronia 1 length=309473 depth=0.65x
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1 length=309473 depth=0.65x
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33.48% | 309,473 bp |
| KAAAAFM010000002 |
Heyndrickxia oleronia 3776T, Heyndrickxia oleronia 2 length=235501 depth=0.74x
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2 length=235501 depth=0.74x
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34.23% | 235,501 bp |
| KAAAAFM010000003 |
Heyndrickxia oleronia 3776T, Heyndrickxia oleronia 3 length=231206 depth=1.19x
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3 length=231206 depth=1.19x
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34.65% | 231,206 bp |
| KAAAAFM010000004 |
Heyndrickxia oleronia 3776T, Heyndrickxia oleronia 4 length=221879 depth=0.77x
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4 length=221879 depth=0.77x
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34.91% | 221,879 bp |
| KAAAAFM010000005 |
Heyndrickxia oleronia 3776T, Heyndrickxia oleronia 5 length=201319 depth=1.17x
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5 length=201319 depth=1.17x
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36.35% | 201,319 bp |
| KAAAAFM010000006 |
Heyndrickxia oleronia 3776T, Heyndrickxia oleronia 6 length=192431 depth=1.00x
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6 length=192431 depth=1.00x
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35.45% | 192,431 bp |
| KAAAAFM010000007 |
Heyndrickxia oleronia 3776T, Heyndrickxia oleronia 7 length=186199 depth=0.98x
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7 length=186199 depth=0.98x
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36.33% | 186,199 bp |
| KAAAAFM010000008 |
Heyndrickxia oleronia 3776T, Heyndrickxia oleronia 8 length=184283 depth=1.25x
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8 length=184283 depth=1.25x
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35.75% | 184,283 bp |
| KAAAAFM010000009 |
Heyndrickxia oleronia 3776T, Heyndrickxia oleronia 9 length=166731 depth=1.36x
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9 length=166731 depth=1.36x
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36.05% | 166,731 bp |
| KAAAAFM010000010 |
Heyndrickxia oleronia 3776T, Heyndrickxia oleronia 10 length=160662 depth=1.29x
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10 length=160662 depth=1.29x
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37.18% | 160,662 bp |