유전체
Niallia circulans 3347T, Contig level genome assembly
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AccessionKAAAAFI01
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Submission date2025-03-11
Project Detail
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BioProject
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KAP241475 |
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프로젝트의 영문 제목
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Genome sequence assemblies of microbial strains collected by Korean Collection for Type Cultures (KCTC)
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프로젝트의 영문 설명
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The genome sequence assembly results using the Illumina HiSeq 2000 sequencing data of the microorganisms (BioProject KAP241464). The methods for data QC, assembly, and annotation are identical to those of BioProject KAP241424, so please refer to the README file of that BioProject.
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등록자의 영문 이름
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Jeong Haeyoung
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BioSample
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BioSample Accession ID
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KAS24111999 |
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BioSample name
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3347T
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Organism
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Niallia circulans
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NCBItaxonomyID
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1397
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Strain
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KCTC 3347
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Breed
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Cultivar
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Isolate
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Ecotype
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Host
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Lab Host
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Isolation Source
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soil
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Sample Division
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Bacteria
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DataSet
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Name of submitter's organization
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Korea Research Institute of Bioscience and Biotechnology
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Department of submitter
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Korea Bioinformation Center (KOBIC)
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Country of submitter
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Republic of Korea
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Street address
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80 Gwahak-ro
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City
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Yuseong-gu
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State / Province / Region
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Daejeon
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Zip Code (Postal Code)
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34096
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Contact person information
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Publication status
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Unpublished
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Publication
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Reference title
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Confirm update of existing submission
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No
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Existing KNA Accession ID
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Sequence Authors
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Sample processing protocol
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Data processing protocol
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Supplementary information
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Release Protocol?
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No
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Confirm full genome
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Yes (even for draft genomes or if a prokaryotic genome assembly may not incude plasmids)
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Description for subset of the genome
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Assembly state
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One or more chromosomes are still in multiple pieces and/or some sequences are not assembled into chromosomes
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Assembly level
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Contig
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Confirm de novo assembly
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Yes
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Reference assembly accession ID
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Confirm final version
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Yes
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Locus Tag Prefix
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Reference assembly accession
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Did you submit KRA data for this Genome submission?
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Yes
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KRA Accession ID
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Assembly date
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Sequencing platform - KRA Run
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Sequencing platform
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Sequencing platform
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Assembly method
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Haplotype phasing method
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Assembly name
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hasN
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No
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Did you randomly merge the sequences into a single sequence?
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No
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Do any of the N's represents gaps of completely unknown size gaps?
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Appropriate minimum number of Ns in a row (0-10) that represents a gap
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Representataion of Unknown Gaps
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What type of evidence was used to assert linkage across the assembly gaps?
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Annotation file format
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GFF
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Total length
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5092809
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Total contigs
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90
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Scaffolds or chromosomes Total length
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0
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Scaffolds or chromosomes Total contigs
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0
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Sequences belong to?
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Chromosome
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Organelle
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Plasmid
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Nucleotide Accession
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| File Name | Size | Type | Published | Download | |
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| 3347T.fasta | 5,180,263 5,180,263 | fasta | 2025-03-10 | ||
| 3347T.gff | 9,030,686 9,030,686 | gff | 2025-03-10 |
Contigs
Showing 1-10 of 90
| Accession | Title | Sequence Id | GC% | Length |
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| KAAAAFI010000001 |
Niallia circulans 3347T, Niallia circulans 1 length=697892 depth=0.98x
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1 length=697892 depth=0.98x
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34.61% | 697,892 bp |
| KAAAAFI010000002 |
Niallia circulans 3347T, Niallia circulans 2 length=406574 depth=1.03x
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2 length=406574 depth=1.03x
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35.60% | 406,574 bp |
| KAAAAFI010000003 |
Niallia circulans 3347T, Niallia circulans 3 length=372835 depth=1.04x
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3 length=372835 depth=1.04x
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36.33% | 372,835 bp |
| KAAAAFI010000004 |
Niallia circulans 3347T, Niallia circulans 4 length=365953 depth=0.97x
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4 length=365953 depth=0.97x
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35.46% | 365,953 bp |
| KAAAAFI010000005 |
Niallia circulans 3347T, Niallia circulans 5 length=350800 depth=1.01x
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5 length=350800 depth=1.01x
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35.04% | 350,800 bp |
| KAAAAFI010000006 |
Niallia circulans 3347T, Niallia circulans 6 length=285397 depth=1.02x
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6 length=285397 depth=1.02x
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35.49% | 285,397 bp |
| KAAAAFI010000007 |
Niallia circulans 3347T, Niallia circulans 7 length=257442 depth=1.00x
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7 length=257442 depth=1.00x
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35.21% | 257,442 bp |
| KAAAAFI010000008 |
Niallia circulans 3347T, Niallia circulans 8 length=234206 depth=0.99x
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8 length=234206 depth=0.99x
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34.41% | 234,206 bp |
| KAAAAFI010000009 |
Niallia circulans 3347T, Niallia circulans 9 length=149357 depth=0.98x
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9 length=149357 depth=0.98x
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35.80% | 149,357 bp |
| KAAAAFI010000010 |
Niallia circulans 3347T, Niallia circulans 10 length=144660 depth=0.98x
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10 length=144660 depth=0.98x
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35.14% | 144,660 bp |