유전체
Planococcus maritimus 3816T, Contig level genome assembly
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AccessionKAAAAFG01
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Submission date2025-03-11
Project Detail
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BioProject
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KAP241475 |
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프로젝트의 영문 제목
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Genome sequence assemblies of microbial strains collected by Korean Collection for Type Cultures (KCTC)
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프로젝트의 영문 설명
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The genome sequence assembly results using the Illumina HiSeq 2000 sequencing data of the microorganisms (BioProject KAP241464). The methods for data QC, assembly, and annotation are identical to those of BioProject KAP241424, so please refer to the README file of that BioProject.
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등록자의 영문 이름
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Jeong Haeyoung
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BioSample
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BioSample Accession ID
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KAS24111997 |
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BioSample name
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3816T
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Organism
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Planococcus maritimus
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NCBItaxonomyID
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192421
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Strain
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KCTC 3816
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Breed
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Cultivar
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Isolate
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Ecotype
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Host
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Lab Host
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Isolation Source
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seawater of a tidal flat
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Sample Division
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Bacteria
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DataSet
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Name of submitter's organization
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Korea Research Institute of Bioscience and Biotechnology
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Department of submitter
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Korea Bioinformation Center (KOBIC)
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Country of submitter
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Republic of Korea
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Street address
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78 Gwahak-ro
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City
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Yuseong-gu
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State / Province / Region
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Daejeon
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Zip Code (Postal Code)
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34094
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Contact person information
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Publication status
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Unpublished
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Publication
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Reference title
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Confirm update of existing submission
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No
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Existing KNA Accession ID
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Sequence Authors
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Sample processing protocol
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Data processing protocol
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Supplementary information
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Release Protocol?
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No
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Confirm full genome
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Yes (even for draft genomes or if a prokaryotic genome assembly may not incude plasmids)
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Description for subset of the genome
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Assembly state
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One or more chromosomes are still in multiple pieces and/or some sequences are not assembled into chromosomes
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Assembly level
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Contig
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Confirm de novo assembly
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Yes
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Reference assembly accession ID
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Confirm final version
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Yes
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Locus Tag Prefix
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Reference assembly accession
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Did you submit KRA data for this Genome submission?
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Yes
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KRA Accession ID
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Assembly date
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Sequencing platform - KRA Run
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Sequencing platform
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Sequencing platform
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Assembly method
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Haplotype phasing method
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Assembly name
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hasN
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No
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Did you randomly merge the sequences into a single sequence?
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No
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Do any of the N's represents gaps of completely unknown size gaps?
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Appropriate minimum number of Ns in a row (0-10) that represents a gap
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Representataion of Unknown Gaps
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What type of evidence was used to assert linkage across the assembly gaps?
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Annotation file format
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GFF
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Total length
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3242304
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Total contigs
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28
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Scaffolds or chromosomes Total length
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0
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Scaffolds or chromosomes Total contigs
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0
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Sequences belong to?
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Chromosome
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Organelle
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Plasmid
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Nucleotide Accession
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| File Name | Size | Type | Published | Download | |
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| 3816T.fasta | 3,297,174 3,297,174 | fasta | 2025-03-10 | ||
| 3816T.gff | 5,867,463 5,867,463 | gff | 2025-03-10 |
Contigs
Showing 1-10 of 28
| Accession | Title | Sequence Id | GC% | Length |
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| KAAAAFG010000001 |
Planococcus maritimus 3816T, Planococcus maritimus 1 length=1007190 depth=0.83x
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1 length=1007190 depth=0.83x
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46.60% | 1,007,190 bp |
| KAAAAFG010000002 |
Planococcus maritimus 3816T, Planococcus maritimus 2 length=515990 depth=1.17x
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2 length=515990 depth=1.17x
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46.74% | 515,990 bp |
| KAAAAFG010000003 |
Planococcus maritimus 3816T, Planococcus maritimus 3 length=385710 depth=1.00x
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3 length=385710 depth=1.00x
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47.42% | 385,710 bp |
| KAAAAFG010000004 |
Planococcus maritimus 3816T, Planococcus maritimus 4 length=368813 depth=1.08x
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4 length=368813 depth=1.08x
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48.74% | 368,813 bp |
| KAAAAFG010000005 |
Planococcus maritimus 3816T, Planococcus maritimus 5 length=278109 depth=1.02x
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5 length=278109 depth=1.02x
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45.57% | 278,109 bp |
| KAAAAFG010000006 |
Planococcus maritimus 3816T, Planococcus maritimus 6 length=173316 depth=0.87x
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6 length=173316 depth=0.87x
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47.65% | 173,316 bp |
| KAAAAFG010000007 |
Planococcus maritimus 3816T, Planococcus maritimus 7 length=95802 depth=1.01x
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7 length=95802 depth=1.01x
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48.03% | 95,802 bp |
| KAAAAFG010000008 |
Planococcus maritimus 3816T, Planococcus maritimus 8 length=87624 depth=0.90x
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8 length=87624 depth=0.90x
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47.66% | 87,624 bp |
| KAAAAFG010000009 |
Planococcus maritimus 3816T, Planococcus maritimus 9 length=84948 depth=0.92x
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9 length=84948 depth=0.92x
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46.82% | 84,948 bp |
| KAAAAFG010000010 |
Planococcus maritimus 3816T, Planococcus maritimus 10 length=65836 depth=1.23x
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10 length=65836 depth=1.23x
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47.05% | 65,836 bp |