유전체
Paenibacillus amylolyticus 3005T, Contig level genome assembly
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AccessionKAAAAFF01
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Submission date2025-03-11
Project Detail
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BioProject
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KAP241475 |
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프로젝트의 영문 제목
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Genome sequence assemblies of microbial strains collected by Korean Collection for Type Cultures (KCTC)
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프로젝트의 영문 설명
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The genome sequence assembly results using the Illumina HiSeq 2000 sequencing data of the microorganisms (BioProject KAP241464). The methods for data QC, assembly, and annotation are identical to those of BioProject KAP241424, so please refer to the README file of that BioProject.
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등록자의 영문 이름
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Jeong Haeyoung
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BioSample
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BioSample Accession ID
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KAS24111996 |
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BioSample name
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3005T
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Organism
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Paenibacillus amylolyticus
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NCBItaxonomyID
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1451
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Strain
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KCTC 3005
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Breed
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Cultivar
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Isolate
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Ecotype
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Host
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Lab Host
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Isolation Source
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soil
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Sample Division
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Bacteria
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DataSet
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Name of submitter's organization
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Korea Research Institute of Bioscience and Biotechnology
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Department of submitter
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Korea Bioinformation Center (KOBIC)
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Country of submitter
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Republic of Korea
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Street address
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77 Gwahak-ro
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City
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Yuseong-gu
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State / Province / Region
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Daejeon
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Zip Code (Postal Code)
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34093
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Contact person information
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Publication status
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Unpublished
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Publication
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Reference title
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Confirm update of existing submission
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No
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Existing KNA Accession ID
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Sequence Authors
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Sample processing protocol
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Data processing protocol
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Supplementary information
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Release Protocol?
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No
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Confirm full genome
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Yes (even for draft genomes or if a prokaryotic genome assembly may not incude plasmids)
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Description for subset of the genome
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Assembly state
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One or more chromosomes are still in multiple pieces and/or some sequences are not assembled into chromosomes
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Assembly level
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Contig
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Confirm de novo assembly
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Yes
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Reference assembly accession ID
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Confirm final version
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Yes
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Locus Tag Prefix
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Reference assembly accession
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Did you submit KRA data for this Genome submission?
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Yes
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KRA Accession ID
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Assembly date
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Sequencing platform - KRA Run
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Sequencing platform
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Sequencing platform
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Assembly method
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Haplotype phasing method
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Assembly name
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hasN
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No
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Did you randomly merge the sequences into a single sequence?
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No
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Do any of the N's represents gaps of completely unknown size gaps?
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Appropriate minimum number of Ns in a row (0-10) that represents a gap
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Representataion of Unknown Gaps
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What type of evidence was used to assert linkage across the assembly gaps?
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Annotation file format
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GFF
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Total length
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6767360
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Total contigs
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54
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Scaffolds or chromosomes Total length
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0
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Scaffolds or chromosomes Total contigs
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0
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Sequences belong to?
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Chromosome
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Organelle
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Plasmid
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Nucleotide Accession
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| File Name | Size | Type | Published | Download | |
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| 3005T.fasta | 6,881,708 6,881,708 | fasta | 2025-03-10 | ||
| 3005T.gff | 11,798,251 11,798,251 | gff | 2025-03-10 |
Contigs
Showing 1-10 of 54
| Accession | Title | Sequence Id | GC% | Length |
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| KAAAAFF010000001 |
Paenibacillus amylolyticus 3005T, Paenibacillus amylolyticus 1 length=1023996 depth=0.91x
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1 length=1023996 depth=0.91x
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44.36% | 1,023,996 bp |
| KAAAAFF010000002 |
Paenibacillus amylolyticus 3005T, Paenibacillus amylolyticus 2 length=949683 depth=0.90x
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2 length=949683 depth=0.90x
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44.39% | 949,683 bp |
| KAAAAFF010000003 |
Paenibacillus amylolyticus 3005T, Paenibacillus amylolyticus 3 length=890670 depth=1.00x
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3 length=890670 depth=1.00x
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45.56% | 890,670 bp |
| KAAAAFF010000004 |
Paenibacillus amylolyticus 3005T, Paenibacillus amylolyticus 4 length=762245 depth=1.09x
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4 length=762245 depth=1.09x
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46.39% | 762,245 bp |
| KAAAAFF010000005 |
Paenibacillus amylolyticus 3005T, Paenibacillus amylolyticus 5 length=556315 depth=0.96x
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5 length=556315 depth=0.96x
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45.82% | 556,315 bp |
| KAAAAFF010000006 |
Paenibacillus amylolyticus 3005T, Paenibacillus amylolyticus 6 length=294539 depth=1.08x
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6 length=294539 depth=1.08x
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46.56% | 294,539 bp |
| KAAAAFF010000007 |
Paenibacillus amylolyticus 3005T, Paenibacillus amylolyticus 7 length=265800 depth=1.22x
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7 length=265800 depth=1.22x
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46.80% | 265,800 bp |
| KAAAAFF010000008 |
Paenibacillus amylolyticus 3005T, Paenibacillus amylolyticus 8 length=241442 depth=1.07x
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8 length=241442 depth=1.07x
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47.36% | 241,442 bp |
| KAAAAFF010000009 |
Paenibacillus amylolyticus 3005T, Paenibacillus amylolyticus 9 length=233130 depth=1.17x
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9 length=233130 depth=1.17x
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47.25% | 233,130 bp |
| KAAAAFF010000010 |
Paenibacillus amylolyticus 3005T, Paenibacillus amylolyticus 10 length=231186 depth=1.17x
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10 length=231186 depth=1.17x
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43.54% | 231,186 bp |