유전체
Sporosarcina psychrophila 3446T, Contig level genome assembly
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AccessionKAAAAFD01
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Submission date2025-03-11
Project Detail
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BioProject
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KAP241475 |
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프로젝트의 영문 제목
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Genome sequence assemblies of microbial strains collected by Korean Collection for Type Cultures (KCTC)
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프로젝트의 영문 설명
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The genome sequence assembly results using the Illumina HiSeq 2000 sequencing data of the microorganisms (BioProject KAP241464). The methods for data QC, assembly, and annotation are identical to those of BioProject KAP241424, so please refer to the README file of that BioProject.
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등록자의 영문 이름
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Jeong Haeyoung
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BioSample
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BioSample Accession ID
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KAS24111994 |
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BioSample name
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3446T
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Organism
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Sporosarcina psychrophila
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NCBItaxonomyID
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1476
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Strain
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KCTC 3446
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Breed
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Cultivar
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Isolate
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Ecotype
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Host
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Lab Host
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Isolation Source
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Not applicable
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Sample Division
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Bacteria
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DataSet
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Name of submitter's organization
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Korea Research Institute of Bioscience and Biotechnology
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Department of submitter
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Korea Bioinformation Center (KOBIC)
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Country of submitter
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Republic of Korea
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Street address
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75 Gwahak-ro
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City
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Yuseong-gu
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State / Province / Region
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Daejeon
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Zip Code (Postal Code)
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34091
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Contact person information
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Publication status
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Unpublished
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Publication
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Reference title
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Confirm update of existing submission
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No
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Existing KNA Accession ID
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Sequence Authors
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Sample processing protocol
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Data processing protocol
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Supplementary information
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Release Protocol?
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No
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Confirm full genome
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Yes (even for draft genomes or if a prokaryotic genome assembly may not incude plasmids)
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Description for subset of the genome
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Assembly state
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One or more chromosomes are still in multiple pieces and/or some sequences are not assembled into chromosomes
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Assembly level
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Contig
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Confirm de novo assembly
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Yes
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Reference assembly accession ID
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Confirm final version
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Yes
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Locus Tag Prefix
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Reference assembly accession
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Did you submit KRA data for this Genome submission?
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Yes
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KRA Accession ID
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Assembly date
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Sequencing platform - KRA Run
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Sequencing platform
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Sequencing platform
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Assembly method
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Haplotype phasing method
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Assembly name
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hasN
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No
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Did you randomly merge the sequences into a single sequence?
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No
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Do any of the N's represents gaps of completely unknown size gaps?
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Appropriate minimum number of Ns in a row (0-10) that represents a gap
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Representataion of Unknown Gaps
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What type of evidence was used to assert linkage across the assembly gaps?
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Annotation file format
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GFF
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Total length
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4445398
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Total contigs
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110
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Scaffolds or chromosomes Total length
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0
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Scaffolds or chromosomes Total contigs
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0
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Sequences belong to?
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Chromosome
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Organelle
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Plasmid
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Nucleotide Accession
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| File Name | Size | Type | Published | Download | |
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| 3446T.fasta | 4,522,667 4,522,667 | fasta | 2025-03-10 | ||
| 3446T.gff | 7,842,915 7,842,915 | gff | 2025-03-10 |
Contigs
Showing 1-10 of 110
| Accession | Title | Sequence Id | GC% | Length |
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| KAAAAFD010000001 |
Sporosarcina psychrophila 3446T, Sporosarcina psychrophila 1 length=487431 depth=0.98x
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1 length=487431 depth=0.98x
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40.72% | 487,431 bp |
| KAAAAFD010000002 |
Sporosarcina psychrophila 3446T, Sporosarcina psychrophila 2 length=410911 depth=0.97x
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2 length=410911 depth=0.97x
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40.47% | 410,911 bp |
| KAAAAFD010000003 |
Sporosarcina psychrophila 3446T, Sporosarcina psychrophila 3 length=350918 depth=1.00x
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3 length=350918 depth=1.00x
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41.04% | 350,918 bp |
| KAAAAFD010000004 |
Sporosarcina psychrophila 3446T, Sporosarcina psychrophila 4 length=213368 depth=1.15x
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4 length=213368 depth=1.15x
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39.68% | 213,368 bp |
| KAAAAFD010000005 |
Sporosarcina psychrophila 3446T, Sporosarcina psychrophila 5 length=188386 depth=1.07x
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5 length=188386 depth=1.07x
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42.25% | 188,386 bp |
| KAAAAFD010000006 |
Sporosarcina psychrophila 3446T, Sporosarcina psychrophila 6 length=164006 depth=1.00x
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6 length=164006 depth=1.00x
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42.06% | 164,006 bp |
| KAAAAFD010000007 |
Sporosarcina psychrophila 3446T, Sporosarcina psychrophila 7 length=143496 depth=1.17x
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7 length=143496 depth=1.17x
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41.23% | 143,496 bp |
| KAAAAFD010000008 |
Sporosarcina psychrophila 3446T, Sporosarcina psychrophila 8 length=140656 depth=0.99x
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8 length=140656 depth=0.99x
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43.34% | 140,656 bp |
| KAAAAFD010000009 |
Sporosarcina psychrophila 3446T, Sporosarcina psychrophila 9 length=108698 depth=1.05x
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9 length=108698 depth=1.05x
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40.75% | 108,698 bp |
| KAAAAFD010000010 |
Sporosarcina psychrophila 3446T, Sporosarcina psychrophila 10 length=104229 depth=1.15x
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10 length=104229 depth=1.15x
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41.05% | 104,229 bp |