유전체
Paenibacillus pabuli 3398T, Contig level genome assembly
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AccessionKAAAAFC01
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Submission date2025-03-11
Project Detail
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BioProject
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KAP241475 |
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프로젝트의 영문 제목
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Genome sequence assemblies of microbial strains collected by Korean Collection for Type Cultures (KCTC)
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프로젝트의 영문 설명
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The genome sequence assembly results using the Illumina HiSeq 2000 sequencing data of the microorganisms (BioProject KAP241464). The methods for data QC, assembly, and annotation are identical to those of BioProject KAP241424, so please refer to the README file of that BioProject.
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등록자의 영문 이름
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Jeong Haeyoung
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BioSample
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BioSample Accession ID
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KAS24111993 |
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BioSample name
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3398T
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Organism
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Paenibacillus pabuli
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NCBItaxonomyID
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1472
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Strain
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KCTC 3398
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Breed
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Cultivar
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Isolate
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Ecotype
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Host
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Lab Host
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Isolation Source
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green or fermenting fodder
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Sample Division
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Bacteria
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DataSet
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Name of submitter's organization
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Korea Research Institute of Bioscience and Biotechnology
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Department of submitter
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Korea Bioinformation Center (KOBIC)
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Country of submitter
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Republic of Korea
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Street address
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74 Gwahak-ro
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City
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Yuseong-gu
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State / Province / Region
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Daejeon
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Zip Code (Postal Code)
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34090
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Contact person information
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Publication status
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Unpublished
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Publication
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Reference title
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Confirm update of existing submission
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No
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Existing KNA Accession ID
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Sequence Authors
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Sample processing protocol
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Data processing protocol
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Supplementary information
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Release Protocol?
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No
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Confirm full genome
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Yes (even for draft genomes or if a prokaryotic genome assembly may not incude plasmids)
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Description for subset of the genome
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Assembly state
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One or more chromosomes are still in multiple pieces and/or some sequences are not assembled into chromosomes
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Assembly level
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Contig
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Confirm de novo assembly
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Yes
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Reference assembly accession ID
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Confirm final version
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Yes
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Locus Tag Prefix
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Reference assembly accession
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Did you submit KRA data for this Genome submission?
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Yes
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KRA Accession ID
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Assembly date
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Sequencing platform - KRA Run
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Sequencing platform
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Sequencing platform
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Assembly method
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Haplotype phasing method
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Assembly name
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hasN
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No
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Did you randomly merge the sequences into a single sequence?
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No
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Do any of the N's represents gaps of completely unknown size gaps?
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Appropriate minimum number of Ns in a row (0-10) that represents a gap
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Representataion of Unknown Gaps
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What type of evidence was used to assert linkage across the assembly gaps?
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Annotation file format
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GFF
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Total length
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7343405
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Total contigs
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64
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Scaffolds or chromosomes Total length
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0
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Scaffolds or chromosomes Total contigs
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0
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Sequences belong to?
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Chromosome
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Organelle
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Plasmid
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Nucleotide Accession
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| File Name | Size | Type | Published | Download | |
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| 3398T.fasta | 7,467,632 7,467,632 | fasta | 2025-03-10 | ||
| 3398T.gff | 7,467,632 7,467,632 | gff | 2025-03-10 |
Contigs
Showing 1-10 of 64
| Accession | Title | Sequence Id | GC% | Length |
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| KAAAAFC010000001 |
Paenibacillus pabuli 3398T, Paenibacillus pabuli 1 length=806785 depth=0.96x
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1 length=806785 depth=0.96x
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46.71% | 806,785 bp |
| KAAAAFC010000002 |
Paenibacillus pabuli 3398T, Paenibacillus pabuli 2 length=785321 depth=1.06x
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2 length=785321 depth=1.06x
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47.37% | 785,321 bp |
| KAAAAFC010000003 |
Paenibacillus pabuli 3398T, Paenibacillus pabuli 3 length=770963 depth=1.00x
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3 length=770963 depth=1.00x
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47.57% | 770,963 bp |
| KAAAAFC010000004 |
Paenibacillus pabuli 3398T, Paenibacillus pabuli 4 length=736851 depth=0.95x
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4 length=736851 depth=0.95x
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46.41% | 736,851 bp |
| KAAAAFC010000005 |
Paenibacillus pabuli 3398T, Paenibacillus pabuli 5 length=659164 depth=0.91x
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5 length=659164 depth=0.91x
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45.88% | 659,164 bp |
| KAAAAFC010000006 |
Paenibacillus pabuli 3398T, Paenibacillus pabuli 6 length=457452 depth=1.02x
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6 length=457452 depth=1.02x
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45.71% | 457,452 bp |
| KAAAAFC010000007 |
Paenibacillus pabuli 3398T, Paenibacillus pabuli 7 length=456100 depth=1.03x
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7 length=456100 depth=1.03x
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46.50% | 456,100 bp |
| KAAAAFC010000008 |
Paenibacillus pabuli 3398T, Paenibacillus pabuli 8 length=412100 depth=1.03x
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8 length=412100 depth=1.03x
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48.49% | 412,100 bp |
| KAAAAFC010000009 |
Paenibacillus pabuli 3398T, Paenibacillus pabuli 9 length=351226 depth=0.96x
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9 length=351226 depth=0.96x
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44.37% | 351,226 bp |
| KAAAAFC010000010 |
Paenibacillus pabuli 3398T, Paenibacillus pabuli 10 length=251659 depth=1.04x
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10 length=251659 depth=1.04x
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46.72% | 251,659 bp |