유전체
Priestia koreensis 3914T, Contig level genome assembly
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AccessionKAAAAFB01
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Submission date2025-03-11
Project Detail
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BioProject
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KAP241475 |
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프로젝트의 영문 제목
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Genome sequence assemblies of microbial strains collected by Korean Collection for Type Cultures (KCTC)
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프로젝트의 영문 설명
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The genome sequence assembly results using the Illumina HiSeq 2000 sequencing data of the microorganisms (BioProject KAP241464). The methods for data QC, assembly, and annotation are identical to those of BioProject KAP241424, so please refer to the README file of that BioProject.
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등록자의 영문 이름
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Jeong Haeyoung
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BioSample
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BioSample Accession ID
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KAS24111992 |
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BioSample name
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3914T
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Organism
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Priestia koreensis
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NCBItaxonomyID
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284581
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Strain
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KCTC 3914
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Breed
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Cultivar
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Isolate
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Ecotype
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Host
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Lab Host
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Isolation Source
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rhizosphere of willow roots
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Sample Division
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Bacteria
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DataSet
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Name of submitter's organization
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Korea Research Institute of Bioscience and Biotechnology
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Department of submitter
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Korea Bioinformation Center (KOBIC)
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Country of submitter
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Republic of Korea
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Street address
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73 Gwahak-ro
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City
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Yuseong-gu
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State / Province / Region
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Daejeon
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Zip Code (Postal Code)
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34089
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Contact person information
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Publication status
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Unpublished
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Publication
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Reference title
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Confirm update of existing submission
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No
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Existing KNA Accession ID
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Sequence Authors
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Sample processing protocol
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Data processing protocol
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Supplementary information
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Release Protocol?
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No
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Confirm full genome
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Yes (even for draft genomes or if a prokaryotic genome assembly may not incude plasmids)
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Description for subset of the genome
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Assembly state
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One or more chromosomes are still in multiple pieces and/or some sequences are not assembled into chromosomes
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Assembly level
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Contig
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Confirm de novo assembly
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Yes
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Reference assembly accession ID
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Confirm final version
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Yes
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Locus Tag Prefix
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Reference assembly accession
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Did you submit KRA data for this Genome submission?
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Yes
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KRA Accession ID
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Assembly date
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Sequencing platform - KRA Run
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Sequencing platform
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Sequencing platform
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Assembly method
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Haplotype phasing method
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Assembly name
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hasN
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No
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Did you randomly merge the sequences into a single sequence?
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No
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Do any of the N's represents gaps of completely unknown size gaps?
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Appropriate minimum number of Ns in a row (0-10) that represents a gap
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Representataion of Unknown Gaps
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What type of evidence was used to assert linkage across the assembly gaps?
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Annotation file format
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GFF
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Total length
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4576902
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Total contigs
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66
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Scaffolds or chromosomes Total length
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0
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Scaffolds or chromosomes Total contigs
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0
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Sequences belong to?
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Chromosome
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Organelle
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Plasmid
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Nucleotide Accession
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| File Name | Size | Type | Published | Download | |
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| 3914T.fasta | 4,655,110 4,655,110 | fasta | 2025-03-10 | ||
| 3914T.gff | 8,229,944 8,229,944 | gff | 2025-03-10 |
Contigs
Showing 1-10 of 66
| Accession | Title | Sequence Id | GC% | Length |
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| KAAAAFB010000001 |
Priestia koreensis 3914T, Priestia koreensis 1 length=404440 depth=0.74x
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1 length=404440 depth=0.74x
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40.15% | 404,440 bp |
| KAAAAFB010000002 |
Priestia koreensis 3914T, Priestia koreensis 2 length=396429 depth=0.88x
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2 length=396429 depth=0.88x
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40.04% | 396,429 bp |
| KAAAAFB010000003 |
Priestia koreensis 3914T, Priestia koreensis 3 length=348455 depth=1.27x
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3 length=348455 depth=1.27x
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40.40% | 348,455 bp |
| KAAAAFB010000004 |
Priestia koreensis 3914T, Priestia koreensis 4 length=317409 depth=1.00x
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4 length=317409 depth=1.00x
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40.33% | 317,409 bp |
| KAAAAFB010000005 |
Priestia koreensis 3914T, Priestia koreensis 5 length=259301 depth=1.49x
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5 length=259301 depth=1.49x
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39.98% | 259,301 bp |
| KAAAAFB010000006 |
Priestia koreensis 3914T, Priestia koreensis 6 length=248176 depth=0.81x
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6 length=248176 depth=0.81x
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39.49% | 248,176 bp |
| KAAAAFB010000007 |
Priestia koreensis 3914T, Priestia koreensis 7 length=218840 depth=1.03x
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7 length=218840 depth=1.03x
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41.31% | 218,840 bp |
| KAAAAFB010000008 |
Priestia koreensis 3914T, Priestia koreensis 8 length=193454 depth=0.85x
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8 length=193454 depth=0.85x
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40.75% | 193,454 bp |
| KAAAAFB010000009 |
Priestia koreensis 3914T, Priestia koreensis 9 length=182715 depth=1.21x
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9 length=182715 depth=1.21x
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40.71% | 182,715 bp |
| KAAAAFB010000010 |
Priestia koreensis 3914T, Priestia koreensis 10 length=144345 depth=1.56x
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10 length=144345 depth=1.56x
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40.88% | 144,345 bp |