Genome
Formosa algae 12364T, Contig level genome assembly
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AccessionKAAAAEZ01
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Submission date2025-03-11
Project Detail
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BioProject
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KAP241475 |
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Project title
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Genome sequence assemblies of microbial strains collected by Korean Collection for Type Cultures (KCTC)
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Project description
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The genome sequence assembly results using the Illumina HiSeq 2000 sequencing data of the microorganisms (BioProject KAP241464). The methods for data QC, assembly, and annotation are identical to those of BioProject KAP241424, so please refer to the README file of that BioProject.
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Name of submitter
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Jeong Haeyoung
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BioSample
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BioSample Accession ID
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KAS24111990 |
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BioSample name
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12364T
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Organism
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Formosa algae
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NCBItaxonomyID
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225843
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Strain
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KCTC 12364
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Breed
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Cultivar
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Isolate
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Ecotype
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Host
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Fucus evanescens (brown alga)
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Lab Host
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Isolation Source
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Sample Division
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Bacteria
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DataSet
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Name of submitter's organization
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Korea Research Institute of Bioscience and Biotechnology
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Department of submitter
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Korea Bioinformation Center (KOBIC)
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Country of submitter
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Republic of Korea
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Street address
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71 Gwahak-ro
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City
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Yuseong-gu
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State / Province / Region
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Daejeon
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Zip Code (Postal Code)
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34087
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Contact person information
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Publication status
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Unpublished
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Publication
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Reference title
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Confirm update of existing submission
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No
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Existing KNA Accession ID
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Sequence Authors
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Sample processing protocol
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Data processing protocol
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Supplementary information
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Release Protocol?
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No
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Confirm full genome
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Yes (even for draft genomes or if a prokaryotic genome assembly may not incude plasmids)
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Description for subset of the genome
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Assembly state
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One or more chromosomes are still in multiple pieces and/or some sequences are not assembled into chromosomes
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Assembly level
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Contig
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Confirm de novo assembly
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Yes
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Reference assembly accession ID
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Confirm final version
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Yes
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Locus Tag Prefix
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Reference assembly accession
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Did you submit KRA data for this Genome submission?
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Yes
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KRA Accession ID
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Assembly date
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Sequencing platform - KRA Run
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Sequencing platform
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Sequencing platform
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Assembly method
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Haplotype phasing method
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Assembly name
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hasN
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No
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Did you randomly merge the sequences into a single sequence?
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No
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Do any of the N's represents gaps of completely unknown size gaps?
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Appropriate minimum number of Ns in a row (0-10) that represents a gap
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Representataion of Unknown Gaps
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What type of evidence was used to assert linkage across the assembly gaps?
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Annotation file format
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GFF
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Total length
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4289396
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Total contigs
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57
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Scaffolds or chromosomes Total length
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0
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Scaffolds or chromosomes Total contigs
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0
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Sequences belong to?
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Chromosome
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Organelle
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Plasmid
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Nucleotide Accession
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| File Name | Size | Type | Published | Download | |
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| 12364T.fasta | 4,362,502 4,362,502 | fasta | 2025-03-10 | ||
| 12364T.gff | 4,362,502 4,362,502 | gff | 2025-03-10 |
Contigs
Showing 1-10 of 57
| Accession | Title | Sequence Id | GC% | Length |
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| KAAAAEZ010000001 |
Formosa algae 12364T, Formosa algae 1 length=763678 depth=1.01x
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1 length=763678 depth=1.01x
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33.46% | 763,678 bp |
| KAAAAEZ010000002 |
Formosa algae 12364T, Formosa algae 2 length=468077 depth=1.03x
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2 length=468077 depth=1.03x
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33.78% | 468,077 bp |
| KAAAAEZ010000003 |
Formosa algae 12364T, Formosa algae 3 length=414973 depth=1.00x
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3 length=414973 depth=1.00x
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33.18% | 414,973 bp |
| KAAAAEZ010000004 |
Formosa algae 12364T, Formosa algae 4 length=351193 depth=1.09x
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4 length=351193 depth=1.09x
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32.21% | 351,193 bp |
| KAAAAEZ010000005 |
Formosa algae 12364T, Formosa algae 5 length=323392 depth=0.95x
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5 length=323392 depth=0.95x
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34.36% | 323,392 bp |
| KAAAAEZ010000006 |
Formosa algae 12364T, Formosa algae 6 length=280642 depth=0.92x
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6 length=280642 depth=0.92x
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33.63% | 280,642 bp |
| KAAAAEZ010000007 |
Formosa algae 12364T, Formosa algae 7 length=268490 depth=0.92x
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7 length=268490 depth=0.92x
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32.73% | 268,490 bp |
| KAAAAEZ010000008 |
Formosa algae 12364T, Formosa algae 8 length=221271 depth=0.91x
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8 length=221271 depth=0.91x
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33.01% | 221,271 bp |
| KAAAAEZ010000009 |
Formosa algae 12364T, Formosa algae 9 length=213309 depth=0.96x
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9 length=213309 depth=0.96x
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32.83% | 213,309 bp |
| KAAAAEZ010000010 |
Formosa algae 12364T, Formosa algae 10 length=199137 depth=0.94x
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10 length=199137 depth=0.94x
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35.05% | 199,137 bp |