Genome
Xanthomarina spongicola 22662T, Contig level genome assembly
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AccessionKAAAAEY01
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Submission date2025-03-11
Project Detail
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BioProject
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KAP241475 |
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Project title
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Genome sequence assemblies of microbial strains collected by Korean Collection for Type Cultures (KCTC)
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Project description
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The genome sequence assembly results using the Illumina HiSeq 2000 sequencing data of the microorganisms (BioProject KAP241464). The methods for data QC, assembly, and annotation are identical to those of BioProject KAP241424, so please refer to the README file of that BioProject.
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Name of submitter
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Jeong Haeyoung
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BioSample
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BioSample Accession ID
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KAS24111989 |
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BioSample name
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22662T
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Organism
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Xanthomarina spongicola
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NCBItaxonomyID
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570520
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Strain
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KCTC 22662
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Breed
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Cultivar
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Isolate
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Ecotype
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Host
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Hymeniacidon flavia (marine sponge)
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Lab Host
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Isolation Source
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Sample Division
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Bacteria
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DataSet
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Name of submitter's organization
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Korea Research Institute of Bioscience and Biotechnology
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Department of submitter
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Korea Bioinformation Center (KOBIC)
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Country of submitter
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Republic of Korea
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Street address
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70 Gwahak-ro
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City
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Yuseong-gu
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State / Province / Region
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Daejeon
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Zip Code (Postal Code)
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34086
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Contact person information
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Publication status
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Unpublished
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Publication
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Reference title
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Confirm update of existing submission
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No
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Existing KNA Accession ID
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Sequence Authors
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Sample processing protocol
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Data processing protocol
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Supplementary information
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Release Protocol?
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No
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Confirm full genome
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Yes (even for draft genomes or if a prokaryotic genome assembly may not incude plasmids)
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Description for subset of the genome
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Assembly state
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One or more chromosomes are still in multiple pieces and/or some sequences are not assembled into chromosomes
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Assembly level
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Contig
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Confirm de novo assembly
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Yes
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Reference assembly accession ID
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Confirm final version
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Yes
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Locus Tag Prefix
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Reference assembly accession
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Did you submit KRA data for this Genome submission?
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Yes
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KRA Accession ID
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Assembly date
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Sequencing platform - KRA Run
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Sequencing platform
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Sequencing platform
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Assembly method
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Haplotype phasing method
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Assembly name
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hasN
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No
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Did you randomly merge the sequences into a single sequence?
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No
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Do any of the N's represents gaps of completely unknown size gaps?
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Appropriate minimum number of Ns in a row (0-10) that represents a gap
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Representataion of Unknown Gaps
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What type of evidence was used to assert linkage across the assembly gaps?
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Annotation file format
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GFF
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Total length
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3151103
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Total contigs
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44
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Scaffolds or chromosomes Total length
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0
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Scaffolds or chromosomes Total contigs
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0
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Sequences belong to?
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Chromosome
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Organelle
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Plasmid
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Nucleotide Accession
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| File Name | Size | Type | Published | Download | |
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| 22662T.fasta | 3,204,876 3,204,876 | fasta | 2025-03-10 | ||
| 22662T.gff | 5,586,456 5,586,456 | gff | 2025-03-10 |
Contigs
Showing 1-10 of 44
| Accession | Title | Sequence Id | GC% | Length |
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| KAAAAEY010000001 |
Xanthomarina spongicola 22662T, Xanthomarina spongicola 1 length=881734 depth=1.07x
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1 length=881734 depth=1.07x
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31.28% | 881,734 bp |
| KAAAAEY010000002 |
Xanthomarina spongicola 22662T, Xanthomarina spongicola 2 length=617943 depth=0.92x
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2 length=617943 depth=0.92x
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31.00% | 617,943 bp |
| KAAAAEY010000003 |
Xanthomarina spongicola 22662T, Xanthomarina spongicola 3 length=402054 depth=1.04x
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3 length=402054 depth=1.04x
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31.21% | 402,054 bp |
| KAAAAEY010000004 |
Xanthomarina spongicola 22662T, Xanthomarina spongicola 4 length=253630 depth=0.94x
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4 length=253630 depth=0.94x
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31.12% | 253,630 bp |
| KAAAAEY010000005 |
Xanthomarina spongicola 22662T, Xanthomarina spongicola 5 length=202959 depth=0.98x
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5 length=202959 depth=0.98x
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31.25% | 202,959 bp |
| KAAAAEY010000006 |
Xanthomarina spongicola 22662T, Xanthomarina spongicola 6 length=199286 depth=0.97x
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6 length=199286 depth=0.97x
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31.02% | 199,286 bp |
| KAAAAEY010000007 |
Xanthomarina spongicola 22662T, Xanthomarina spongicola 7 length=117673 depth=1.00x
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7 length=117673 depth=1.00x
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30.63% | 117,673 bp |
| KAAAAEY010000008 |
Xanthomarina spongicola 22662T, Xanthomarina spongicola 8 length=112637 depth=0.92x
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8 length=112637 depth=0.92x
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32.78% | 112,637 bp |
| KAAAAEY010000009 |
Xanthomarina spongicola 22662T, Xanthomarina spongicola 9 length=70884 depth=0.93x
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9 length=70884 depth=0.93x
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30.90% | 70,884 bp |
| KAAAAEY010000010 |
Xanthomarina spongicola 22662T, Xanthomarina spongicola 10 length=66946 depth=1.01x
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10 length=66946 depth=1.01x
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30.57% | 66,946 bp |