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Winogradskyella thalassocola 12221T, Contig level genome assembly
  • Accession
    KAAAAEX01
  • Submission date
    2025-03-11
Project Detail
BioProject detail - BioProject ID, projectTitle, projectDescription, keywords, nameOfSubmitter
BioProject
 KAP241475
프로젝트의 영문 제목
Genome sequence assemblies of microbial strains collected by Korean Collection for Type Cultures (KCTC)
프로젝트의 영문 설명
The genome sequence assembly results using the Illumina HiSeq 2000 sequencing data of the microorganisms (BioProject KAP241464). The methods for data QC, assembly, and annotation are identical to those of BioProject KAP241424, so please refer to the README file of that BioProject.
등록자의 영문 이름
Jeong Haeyoung
BioSample
BioSample Accession ID
KAS24111988
BioSample name
12221T
Organism
Winogradskyella thalassocola
NCBItaxonomyID
262004
Strain
KCTC 12221
Breed
Cultivar
Isolate
Ecotype
Host
Chorda filum (brown alga)
Lab Host
Isolation Source
Sample Division
Bacteria
DataSet
메타데이터 입력
Name of submitter's organization
Korea Research Institute of Bioscience and Biotechnology
Department of submitter
Korea Bioinformation Center (KOBIC)
Country of submitter
Republic of Korea
Street address
69 Gwahak-ro
City
Yuseong-gu
State / Province / Region
Daejeon
Zip Code (Postal Code)
34085
Contact person information
Name
Jeong, Haeyoung
Email
hyjeong@kribb.re.kr
Phone
Publication status
Unpublished
Publication
PubMed ID of publication
DOI of publication
Reference Title
Authors
Journal Title
Journal Year
Journal Volume
Journal Issue
Journal Pages
Publication
Reference title
Confirm update of existing submission
No
Existing KNA Accession ID
Sequence Authors
1 Sequence authors full name
Haeyoung Jeong
Sequence authors initials
Haeyoung Jeong
2 Sequence authors full name
Byoung-Chan Kim
Sequence authors initials
Byoung-Chan Kim
3 Sequence authors full name
Dong-Ho Chang
Sequence authors initials
Dong-Ho Chang
Sample processing protocol
Data processing protocol
Supplementary information
Release Protocol?
No
Confirm full genome
Yes (even for draft genomes or if a prokaryotic genome assembly may not incude plasmids)
Description for subset of the genome
Assembly state
One or more chromosomes are still in multiple pieces and/or some sequences are not assembled into chromosomes
Assembly level
Contig
Confirm de novo assembly
Yes
Reference assembly accession ID
Confirm final version
Yes
Locus Tag Prefix
Reference assembly accession
NCBI Accession
KNA DATA ID
Did you submit KRA data for this Genome submission?
Yes
KRA Accession ID
KAR24088095
Assembly date
Sequencing platform - KRA Run
KRA Run ID
KAR24088095
Platform
ILLUMINA
Instrument model
Illumina HiSeq 2000
Genome coverage
183.8
Sequencing platform
NCBI SRA Run ID
Platform
Instrument model
Genome coverage
Sequencing platform
NCBI SRA Run ID
Platform
Instrument model
Genome coverage
Assembly method
Program
Other (Please specify) - ZGA (unicycler)
Program version or Run date
v0.0.9post2
Haplotype phasing method
Assembly name
hasN
No
Did you randomly merge the sequences into a single sequence?
No
Do any of the N's represents gaps of completely unknown size gaps?
Appropriate minimum number of Ns in a row (0-10) that represents a gap
Representataion of Unknown Gaps
What type of evidence was used to assert linkage across the assembly gaps?
Annotation file format
GFF
Total length
4465656
Total contigs
65
Scaffolds or chromosomes Total length
0
Scaffolds or chromosomes Total contigs
0
Sequences belong to?
Chromosome
Sequence ID
Length
GC%
Chromosome name
Haplotype number
Topology
Confirm complete chromosome
Organelle
Sequence ID
Length
GC%
Organelle information
Organelle name
Topology
Status
Plasmid
Sequence ID
Length
GC%
Plasmid name
Topology
Status
Nucleotide Accession
File
file 목록
File Name Size Type Published Download
12221T.fasta 4,541,940 4,541,940 fasta 2025-03-10
12221T.gff 7,748,601 7,748,601 gff 2025-03-10
Contigs
Showing 1-10 of 65
variant call list
Accession Title Sequence Id GC% Length
KAAAAEX010000001
Winogradskyella thalassocola 12221T, Winogradskyella thalassocola 1 length=1371932 depth=1.11x
1 length=1371932 depth=1.11x
33.63% 1,371,932 bp
KAAAAEX010000002
Winogradskyella thalassocola 12221T, Winogradskyella thalassocola 2 length=482951 depth=0.94x
2 length=482951 depth=0.94x
33.26% 482,951 bp
KAAAAEX010000003
Winogradskyella thalassocola 12221T, Winogradskyella thalassocola 3 length=314804 depth=1.00x
3 length=314804 depth=1.00x
33.05% 314,804 bp
KAAAAEX010000004
Winogradskyella thalassocola 12221T, Winogradskyella thalassocola 4 length=284033 depth=0.94x
4 length=284033 depth=0.94x
32.86% 284,033 bp
KAAAAEX010000005
Winogradskyella thalassocola 12221T, Winogradskyella thalassocola 5 length=228237 depth=0.99x
5 length=228237 depth=0.99x
33.56% 228,237 bp
KAAAAEX010000006
Winogradskyella thalassocola 12221T, Winogradskyella thalassocola 6 length=218376 depth=1.02x
6 length=218376 depth=1.02x
33.46% 218,376 bp
KAAAAEX010000007
Winogradskyella thalassocola 12221T, Winogradskyella thalassocola 7 length=205660 depth=1.06x
7 length=205660 depth=1.06x
32.79% 205,660 bp
KAAAAEX010000008
Winogradskyella thalassocola 12221T, Winogradskyella thalassocola 8 length=184399 depth=0.87x
8 length=184399 depth=0.87x
34.03% 184,399 bp
KAAAAEX010000009
Winogradskyella thalassocola 12221T, Winogradskyella thalassocola 9 length=165621 depth=0.91x
9 length=165621 depth=0.91x
32.95% 165,621 bp
KAAAAEX010000010
Winogradskyella thalassocola 12221T, Winogradskyella thalassocola 10 length=159120 depth=0.93x
10 length=159120 depth=0.93x
31.90% 159,120 bp
1현재 페이지234567
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