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Study A single-cell atlas of malignant pleural effusions in metastatic breast cancer patients
Study Information
Accession
 SCS2203540
Date and Organization
Processed date 2022-07-05
Oranization Pohang University of Science and Technology
Publication
PubMed ID of publication
DOI of publication
Conditions
Species
Scientific Name Homo sapiens
Taxonomy ID 9606
Tissue
 Bodily fluid, Breast
Treatment
 -
Sex
 Female
Cell Line
 -
Age
 -
Cell Type
 -
Development Stage
 -
Cell Subtype
Disease
 Breast cancer
Isolate
 -
Disease Stage
 -
Genotype
 -
Helath State
 -
Associated K-BDS/scDB
BioProject
 KAP220354
scDB Study
 N/A
BioSample
 All samples [33]
scDB Data
 All Data [33]
KRA
 All experiments [33]
Cell Browser
Cell Browse
Cell Browser
Cell Browser
Cell-cell interaction
Scatter plot
File
file 목록
File Name Size Type Published Download
SCS2201561_celltype_B cell_DEG_wilcoxon.csv 3,872,772 3,872,772 csv
SCS2201561_celltype_Basophil_DEG_wilcoxon.csv 3,971,464 3,971,464 csv
SCS2201561_celltype_CD8 T cell_DEG_wilcoxon.csv 4,006,355 4,006,355 csv
SCS2201561_celltype_Dendritic cell_DEG_wilcoxon.csv 4,134,034 4,134,034 csv
SCS2201561_celltype_Eosinophil_DEG_wilcoxon.csv 3,845,753 3,845,753 csv
SCS2201561_celltype_Epithelial cell_DEG_wilcoxon.csv 4,018,689 4,018,689 csv
SCS2201561_celltype_Erythrocyte_DEG_wilcoxon.csv 4,105,055 4,105,055 csv
SCS2201561_celltype_Fibroblast_DEG_wilcoxon.csv 3,881,628 3,881,628 csv
SCS2201561_celltype_Gamma-delta T cell_DEG_wilcoxon.csv 4,294,297 4,294,297 csv
SCS2201561_celltype_Macrophage_DEG_wilcoxon.csv 3,856,565 3,856,565 csv
SCS2201561_celltype_Mesothelial cell_DEG_wilcoxon.csv 4,129,190 4,129,190 csv
SCS2201561_celltype_Monocyte_DEG_wilcoxon.csv 3,919,547 3,919,547 csv
SCS2201561_celltype_Neutrophil_DEG_wilcoxon.csv 3,866,405 3,866,405 csv
SCS2201561_celltype_NK cell_DEG_wilcoxon.csv 3,922,392 3,922,392 csv
SCS2201561_celltype_Plasma cell_DEG_wilcoxon.csv 4,069,442 4,069,442 csv
SCS2201561_celltype_Plasmacytoid dendritic cell_DEG_wilcoxon.csv 4,631,450 4,631,450 csv
SCS2201561_celltype_T cell_DEG_wilcoxon.csv 3,721,452 3,721,452 csv
SCS2201561_celltype_Unknown_DEG_wilcoxon.csv 3,903,843 3,903,843 csv
SCS2201561_leiden_0_DEG_wilcoxon.csv 3,611,784 3,611,784 csv
SCS2201561_leiden_1_DEG_wilcoxon.csv 3,647,175 3,647,175 csv
SCS2201561_leiden_10_DEG_wilcoxon.csv 3,622,484 3,622,484 csv
SCS2201561_leiden_11_DEG_wilcoxon.csv 3,611,996 3,611,996 csv
SCS2201561_leiden_12_DEG_wilcoxon.csv 3,535,585 3,535,585 csv
SCS2201561_leiden_13_DEG_wilcoxon.csv 3,695,487 3,695,487 csv
SCS2201561_leiden_14_DEG_wilcoxon.csv 3,539,283 3,539,283 csv
SCS2201561_leiden_15_DEG_wilcoxon.csv 3,641,208 3,641,208 csv
SCS2201561_leiden_16_DEG_wilcoxon.csv 3,449,675 3,449,675 csv
SCS2201561_leiden_17_DEG_wilcoxon.csv 3,706,039 3,706,039 csv
SCS2201561_leiden_18_DEG_wilcoxon.csv 3,641,500 3,641,500 csv
SCS2201561_leiden_19_DEG_wilcoxon.csv 3,712,197 3,712,197 csv
SCS2201561_leiden_2_DEG_wilcoxon.csv 3,680,020 3,680,020 csv
SCS2201561_leiden_20_DEG_wilcoxon.csv 3,699,746 3,699,746 csv
SCS2201561_leiden_21_DEG_wilcoxon.csv 3,731,719 3,731,719 csv
SCS2201561_leiden_22_DEG_wilcoxon.csv 3,757,075 3,757,075 csv
SCS2201561_leiden_23_DEG_wilcoxon.csv 3,738,560 3,738,560 csv
SCS2201561_leiden_24_DEG_wilcoxon.csv 3,690,371 3,690,371 csv
SCS2201561_leiden_25_DEG_wilcoxon.csv 3,714,236 3,714,236 csv
SCS2201561_leiden_26_DEG_wilcoxon.csv 3,719,840 3,719,840 csv
SCS2201561_leiden_27_DEG_wilcoxon.csv 3,728,260 3,728,260 csv
SCS2201561_leiden_28_DEG_wilcoxon.csv 3,738,546 3,738,546 csv
SCS2201561_leiden_29_DEG_wilcoxon.csv 3,587,498 3,587,498 csv
SCS2201561_leiden_3_DEG_wilcoxon.csv 3,631,184 3,631,184 csv
SCS2201561_leiden_30_DEG_wilcoxon.csv 3,707,726 3,707,726 csv
SCS2201561_leiden_31_DEG_wilcoxon.csv 3,708,697 3,708,697 csv
SCS2201561_leiden_32_DEG_wilcoxon.csv 3,776,101 3,776,101 csv
SCS2201561_leiden_33_DEG_wilcoxon.csv 3,731,415 3,731,415 csv
SCS2201561_leiden_34_DEG_wilcoxon.csv 3,711,851 3,711,851 csv
SCS2201561_leiden_35_DEG_wilcoxon.csv 3,731,165 3,731,165 csv
SCS2201561_leiden_36_DEG_wilcoxon.csv 3,724,286 3,724,286 csv
SCS2201561_leiden_37_DEG_wilcoxon.csv 3,713,874 3,713,874 csv
SCS2201561_leiden_38_DEG_wilcoxon.csv 3,728,502 3,728,502 csv
SCS2201561_leiden_39_DEG_wilcoxon.csv 3,768,817 3,768,817 csv
SCS2201561_leiden_4_DEG_wilcoxon.csv 3,692,677 3,692,677 csv
SCS2201561_leiden_40_DEG_wilcoxon.csv 3,614,464 3,614,464 csv
SCS2201561_leiden_41_DEG_wilcoxon.csv 3,736,041 3,736,041 csv
SCS2201561_leiden_42_DEG_wilcoxon.csv 3,766,915 3,766,915 csv
SCS2201561_leiden_43_DEG_wilcoxon.csv 3,766,237 3,766,237 csv
SCS2201561_leiden_44_DEG_wilcoxon.csv 3,752,113 3,752,113 csv
SCS2201561_leiden_45_DEG_wilcoxon.csv 3,774,159 3,774,159 csv
SCS2201561_leiden_46_DEG_wilcoxon.csv 3,753,553 3,753,553 csv
SCS2201561_leiden_47_DEG_wilcoxon.csv 3,753,589 3,753,589 csv
SCS2201561_leiden_48_DEG_wilcoxon.csv 3,750,866 3,750,866 csv
SCS2201561_leiden_49_DEG_wilcoxon.csv 3,777,935 3,777,935 csv
SCS2201561_leiden_5_DEG_wilcoxon.csv 3,514,857 3,514,857 csv
SCS2201561_leiden_50_DEG_wilcoxon.csv 3,682,590 3,682,590 csv
SCS2201561_leiden_51_DEG_wilcoxon.csv 3,784,181 3,784,181 csv
SCS2201561_leiden_6_DEG_wilcoxon.csv 3,685,323 3,685,323 csv
SCS2201561_leiden_7_DEG_wilcoxon.csv 3,361,915 3,361,915 csv
SCS2201561_leiden_8_DEG_wilcoxon.csv 3,676,847 3,676,847 csv
SCS2201561_leiden_9_DEG_wilcoxon.csv 3,627,482 3,627,482 csv
SCS2203540_adata_cellType_annotated.h5ad 12,048,969,205 12,048,969,205 h5ad
SCS2203540_cell_metadata.csv 140,896,350 140,896,350 csv
SCS2203540_detected_gene_list.csv 369,729 369,729 csv
SCS2203540_hvg_list.csv 31,537 31,537 csv
SCS2203540_pca_embeddings.csv 177,178,830 177,178,830 csv
SCS2203540_tsne_embeddings.csv 17,776,387 17,776,387 csv
SCS2203540_umap_embeddings.csv 17,602,818 17,602,818 csv
SCS2203540_valiDrops_filtered_mtx.tar.gz 2,373,816,971 2,373,816,971 gz
Analysis pipeline(v2025.12)