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Study Development of an integrated analysis system of regulatory networks, pathways, and pharmacogenomics based on large-scale gene signatures
Study Information
Accession
 SCS2100380
Date and Organization
Processed date 2023-09-08
Oranization Korea Research Institute of Bioscience and Biotechnology
Publication
PubMed ID of publication
37680467
DOI of publication
10.1016/j.isci.2023.107675
Conditions
Species
Scientific Name Homo sapiens
Taxonomy ID 9606
Tissue
 Liver, Stomach
Treatment
 -
Sex
 -
Cell Line
 -
Age
 -
Cell Type
 Organoid
Development Stage
 -
Cell Subtype
 Cholangiocyte, Enterocyte, Hepatic progenitor cell, Hepatocyte, Unknown, Gastric chief cell, Gastric epithelial cell, Gastric mucous neck cell, Gastric surface mucous cell, Proliferating gastric epithelial cell
Disease
 -
Isolate
 Sample extraction was prepared using Chromium Single cell 3', Reagent Kits v3 (10X Genomics) according to the manufacturer?梨?찓_ protocols., The DNA sequencing library was prepared using the NimbleGen SeqCap EZ Library kit (Seq Cap EZ Exome v3.0 Kit). For library construction, DNA is extracted from a sample.
Disease Stage
 -
Genotype
 -
Helath State
 -
Associated K-BDS/scDB
BioProject
 KAP210038
scDB Study
 N/A
BioSample
 All samples [10]
scDB Data
 All Data [10]
KRA
 All experiments [10]
Cell Browser
Cell Browse
Cell Browser
Cell Browser
Cell-cell interaction
Scatter plot
File
file 목록
File Name Size Type Published Download
SCS2000111_celltype_Cholangiocyte_DEG_wilcoxon.csv 3,921,556 3,921,556 csv
SCS2000111_celltype_Enterocyte_DEG_wilcoxon.csv 3,800,486 3,800,486 csv
SCS2000111_celltype_Gastric chief cell_DEG_wilcoxon.csv 4,041,567 4,041,567 csv
SCS2000111_celltype_Gastric epithelial cell_DEG_wilcoxon.csv 4,214,684 4,214,684 csv
SCS2000111_celltype_Gastric mucous neck cell_DEG_wilcoxon.csv 4,278,439 4,278,439 csv
SCS2000111_celltype_Gastric surface mucous cell_DEG_wilcoxon.csv 4,315,149 4,315,149 csv
SCS2000111_celltype_Hepatic progenitor cell_DEG_wilcoxon.csv 4,114,244 4,114,244 csv
SCS2000111_celltype_Hepatocyte_DEG_wilcoxon.csv 3,712,247 3,712,247 csv
SCS2000111_celltype_Proliferating gastric epithelial cell_DEG_wilcoxon.csv 4,576,941 4,576,941 csv
SCS2000111_celltype_Unknown_DEG_wilcoxon.csv 3,418,751 3,418,751 csv
SCS2000111_leiden_0_DEG_wilcoxon.csv 3,447,817 3,447,817 csv
SCS2000111_leiden_1_DEG_wilcoxon.csv 3,452,311 3,452,311 csv
SCS2000111_leiden_10_DEG_wilcoxon.csv 3,524,807 3,524,807 csv
SCS2000111_leiden_11_DEG_wilcoxon.csv 3,464,327 3,464,327 csv
SCS2000111_leiden_12_DEG_wilcoxon.csv 3,470,321 3,470,321 csv
SCS2000111_leiden_13_DEG_wilcoxon.csv 3,499,678 3,499,678 csv
SCS2000111_leiden_14_DEG_wilcoxon.csv 3,501,407 3,501,407 csv
SCS2000111_leiden_15_DEG_wilcoxon.csv 3,500,044 3,500,044 csv
SCS2000111_leiden_16_DEG_wilcoxon.csv 3,494,875 3,494,875 csv
SCS2000111_leiden_17_DEG_wilcoxon.csv 3,513,542 3,513,542 csv
SCS2000111_leiden_18_DEG_wilcoxon.csv 3,513,279 3,513,279 csv
SCS2000111_leiden_19_DEG_wilcoxon.csv 3,503,441 3,503,441 csv
SCS2000111_leiden_2_DEG_wilcoxon.csv 3,426,979 3,426,979 csv
SCS2000111_leiden_20_DEG_wilcoxon.csv 3,535,632 3,535,632 csv
SCS2000111_leiden_21_DEG_wilcoxon.csv 3,508,871 3,508,871 csv
SCS2000111_leiden_22_DEG_wilcoxon.csv 3,534,107 3,534,107 csv
SCS2000111_leiden_23_DEG_wilcoxon.csv 3,530,490 3,530,490 csv
SCS2000111_leiden_24_DEG_wilcoxon.csv 3,459,810 3,459,810 csv
SCS2000111_leiden_25_DEG_wilcoxon.csv 3,540,272 3,540,272 csv
SCS2000111_leiden_26_DEG_wilcoxon.csv 3,479,442 3,479,442 csv
SCS2000111_leiden_27_DEG_wilcoxon.csv 3,472,547 3,472,547 csv
SCS2000111_leiden_28_DEG_wilcoxon.csv 3,537,122 3,537,122 csv
SCS2000111_leiden_3_DEG_wilcoxon.csv 3,441,472 3,441,472 csv
SCS2000111_leiden_4_DEG_wilcoxon.csv 3,329,107 3,329,107 csv
SCS2000111_leiden_5_DEG_wilcoxon.csv 3,294,146 3,294,146 csv
SCS2000111_leiden_6_DEG_wilcoxon.csv 3,436,372 3,436,372 csv
SCS2000111_leiden_7_DEG_wilcoxon.csv 3,432,309 3,432,309 csv
SCS2000111_leiden_8_DEG_wilcoxon.csv 3,427,402 3,427,402 csv
SCS2000111_leiden_9_DEG_wilcoxon.csv 3,337,843 3,337,843 csv
SCS2100380_adata_cellType_annotated.h5ad 21,231,334,228 21,231,334,228 h5ad
SCS2100380_cell_metadata.csv 50,033,885 50,033,885 csv
SCS2100380_detected_gene_list.csv 344,694 344,694 csv
SCS2100380_hvg_list.csv 50,365 50,365 csv
SCS2100380_pca_embeddings.csv 63,564,152 63,564,152 csv
SCS2100380_tsne_embeddings.csv 6,411,504 6,411,504 csv
SCS2100380_umap_embeddings.csv 6,377,127 6,377,127 csv
SCS2100380_valiDrops_filtered_mtx.tar.gz 1,091,928,271 1,091,928,271 gz
Analysis pipeline(v2025.12)