Study
Study
Optimization of epigenome data analysis system and development of practical open analysis system
Study Information
|
Accession
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SCS2000111 | ||||
|---|---|---|---|---|---|
|
Date and Organization
|
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Publication
|
|
Conditions
|
Species
|
|
|---|
Tissue |
Urinary bladder, Non-organ sample | Treatment |
- |
|---|---|---|---|
Sex |
Male | Cell Line |
- |
Age |
1 day, 7 days, 8-9 weeks | Cell Type |
- |
Development Stage |
- | Cell Subtype |
Basal urothelial cell, Endothelial cell, Erythrocyte, Fibroblast, Intermediate urothelial cell, Keratinocyte, Lymphatic endothelial cell, Macrophage, Mesenchymal stromal cell, Mesothelial cell, Myeloid cell, Myofibroblast, Neuron, Pericyte, Proliferating urothelial cell, Schwann cell, Smooth muscle cell, Unknown, Urothelial cell, Urothelial umbrella cell, Vascular smooth muscle cell |
Disease |
- | Isolate |
- |
Disease Stage |
- | Genotype |
- |
Helath State |
- | ||
Associated K-BDS/scDB
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BioProject
|
KAP200011 |
scDB Study
|
N/A |
|---|---|---|---|
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BioSample
|
All samples [3] |
scDB Data
|
All Data [3] |
|
KRA
|
All experiments [3] | ||
Cell Browser
Cell Browse
Cell Browser
Cell-cell interaction
Scatter plot
| File Name | Size | Type | Published | Download | |
|---|---|---|---|---|---|
| SCS2000111_adata_cellType_annotated.h5ad | 5,103,247,130 5,103,247,130 | h5ad | |||
| SCS2000111_cell_metadata.csv | 15,497,135 15,497,135 | csv | |||
| SCS2000111_celltype_Basal urothelial cell_DEG_wilcoxon.csv | 3,228,395 3,228,395 | csv | |||
| SCS2000111_celltype_Endothelial cell_DEG_wilcoxon.csv | 3,100,469 3,100,469 | csv | |||
| SCS2000111_celltype_Erythrocyte_DEG_wilcoxon.csv | 2,958,809 2,958,809 | csv | |||
| SCS2000111_celltype_Fibroblast_DEG_wilcoxon.csv | 2,932,909 2,932,909 | csv | |||
| SCS2000111_celltype_Intermediate urothelial cell_DEG_wilcoxon.csv | 1,689,840 1,689,840 | csv | |||
| SCS2000111_celltype_Keratinocyte_DEG_wilcoxon.csv | 3,012,900 3,012,900 | csv | |||
| SCS2000111_celltype_Lymphatic endothelial cell_DEG_wilcoxon.csv | 3,386,632 3,386,632 | csv | |||
| SCS2000111_celltype_Macrophage_DEG_wilcoxon.csv | 2,967,426 2,967,426 | csv | |||
| SCS2000111_celltype_Mesenchymal stromal cell_DEG_wilcoxon.csv | 3,319,624 3,319,624 | csv | |||
| SCS2000111_celltype_Mesothelial cell_DEG_wilcoxon.csv | 3,121,705 3,121,705 | csv | |||
| SCS2000111_celltype_Myeloid cell_DEG_wilcoxon.csv | 3,021,681 3,021,681 | csv | |||
| SCS2000111_celltype_Myofibroblast_DEG_wilcoxon.csv | 2,882,290 2,882,290 | csv | |||
| SCS2000111_celltype_Neuron_DEG_wilcoxon.csv | 2,824,383 2,824,383 | csv | |||
| SCS2000111_celltype_Pericyte_DEG_wilcoxon.csv | 2,911,987 2,911,987 | csv | |||
| SCS2000111_celltype_Proliferating urothelial cell_DEG_wilcoxon.csv | 3,433,777 3,433,777 | csv | |||
| SCS2000111_celltype_Schwann cell_DEG_wilcoxon.csv | 3,003,027 3,003,027 | csv | |||
| SCS2000111_celltype_Smooth muscle cell_DEG_wilcoxon.csv | 3,161,017 3,161,017 | csv | |||
| SCS2000111_celltype_Unknown_DEG_wilcoxon.csv | 2,890,608 2,890,608 | csv | |||
| SCS2000111_celltype_Urothelial cell_DEG_wilcoxon.csv | 3,102,563 3,102,563 | csv | |||
| SCS2000111_celltype_Urothelial umbrella cell_DEG_wilcoxon.csv | 3,311,606 3,311,606 | csv | |||
| SCS2000111_celltype_Vascular smooth muscle cell_DEG_wilcoxon.csv | 3,420,411 3,420,411 | csv | |||
| SCS2000111_detected_gene_list.csv | 204,695 204,695 | csv | |||
| SCS2000111_hvg_list.csv | 44,919 44,919 | csv | |||
| SCS2000111_leiden_0_DEG_wilcoxon.csv | 2,613,300 2,613,300 | csv | |||
| SCS2000111_leiden_1_DEG_wilcoxon.csv | 2,677,959 2,677,959 | csv | |||
| SCS2000111_leiden_10_DEG_wilcoxon.csv | 2,737,158 2,737,158 | csv | |||
| SCS2000111_leiden_11_DEG_wilcoxon.csv | 2,708,513 2,708,513 | csv | |||
| SCS2000111_leiden_12_DEG_wilcoxon.csv | 2,749,997 2,749,997 | csv | |||
| SCS2000111_leiden_13_DEG_wilcoxon.csv | 2,720,606 2,720,606 | csv | |||
| SCS2000111_leiden_14_DEG_wilcoxon.csv | 2,721,629 2,721,629 | csv | |||
| SCS2000111_leiden_15_DEG_wilcoxon.csv | 2,746,541 2,746,541 | csv | |||
| SCS2000111_leiden_16_DEG_wilcoxon.csv | 2,738,781 2,738,781 | csv | |||
| SCS2000111_leiden_17_DEG_wilcoxon.csv | 2,756,737 2,756,737 | csv | |||
| SCS2000111_leiden_18_DEG_wilcoxon.csv | 2,741,135 2,741,135 | csv | |||
| SCS2000111_leiden_19_DEG_wilcoxon.csv | 2,753,203 2,753,203 | csv | |||
| SCS2000111_leiden_2_DEG_wilcoxon.csv | 2,677,402 2,677,402 | csv | |||
| SCS2000111_leiden_20_DEG_wilcoxon.csv | 2,710,463 2,710,463 | csv | |||
| SCS2000111_leiden_21_DEG_wilcoxon.csv | 2,728,105 2,728,105 | csv | |||
| SCS2000111_leiden_22_DEG_wilcoxon.csv | 2,724,854 2,724,854 | csv | |||
| SCS2000111_leiden_23_DEG_wilcoxon.csv | 2,710,641 2,710,641 | csv | |||
| SCS2000111_leiden_24_DEG_wilcoxon.csv | 2,749,095 2,749,095 | csv | |||
| SCS2000111_leiden_25_DEG_wilcoxon.csv | 2,745,939 2,745,939 | csv | |||
| SCS2000111_leiden_26_DEG_wilcoxon.csv | 2,704,159 2,704,159 | csv | |||
| SCS2000111_leiden_27_DEG_wilcoxon.csv | 2,746,832 2,746,832 | csv | |||
| SCS2000111_leiden_28_DEG_wilcoxon.csv | 2,740,134 2,740,134 | csv | |||
| SCS2000111_leiden_29_DEG_wilcoxon.csv | 2,731,059 2,731,059 | csv | |||
| SCS2000111_leiden_3_DEG_wilcoxon.csv | 2,706,812 2,706,812 | csv | |||
| SCS2000111_leiden_30_DEG_wilcoxon.csv | 2,688,419 2,688,419 | csv | |||
| SCS2000111_leiden_31_DEG_wilcoxon.csv | 2,744,099 2,744,099 | csv | |||
| SCS2000111_leiden_32_DEG_wilcoxon.csv | 2,747,261 2,747,261 | csv | |||
| SCS2000111_leiden_33_DEG_wilcoxon.csv | 2,701,897 2,701,897 | csv | |||
| SCS2000111_leiden_34_DEG_wilcoxon.csv | 2,757,124 2,757,124 | csv | |||
| SCS2000111_leiden_35_DEG_wilcoxon.csv | 2,731,336 2,731,336 | csv | |||
| SCS2000111_leiden_36_DEG_wilcoxon.csv | 2,726,508 2,726,508 | csv | |||
| SCS2000111_leiden_37_DEG_wilcoxon.csv | 2,700,804 2,700,804 | csv | |||
| SCS2000111_leiden_4_DEG_wilcoxon.csv | 2,669,502 2,669,502 | csv | |||
| SCS2000111_leiden_5_DEG_wilcoxon.csv | 2,720,466 2,720,466 | csv | |||
| SCS2000111_leiden_6_DEG_wilcoxon.csv | 2,685,420 2,685,420 | csv | |||
| SCS2000111_leiden_7_DEG_wilcoxon.csv | 2,712,177 2,712,177 | csv | |||
| SCS2000111_leiden_8_DEG_wilcoxon.csv | 2,689,741 2,689,741 | csv | |||
| SCS2000111_leiden_9_DEG_wilcoxon.csv | 2,697,657 2,697,657 | csv | |||
| SCS2000111_pca_embeddings.csv | 18,096,214 18,096,214 | csv | |||
| SCS2000111_tsne_embeddings.csv | 1,814,448 1,814,448 | csv | |||
| SCS2000111_umap_embeddings.csv | 1,804,165 1,804,165 | csv | |||
| SCS2000111_valiDrops_filtered_mtx.tar.gz | 299,848,835 299,848,835 | gz |