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Study Optimization of epigenome data analysis system and development of practical open analysis system

Study Information
Accession
SCS2000111
Date and Organization
Processed date 2020-09-27
Oranization Pohang University of Science and Technology
Publication
PubMed ID of publication
32224841
33328632
DOI of publication
10.5808/GI.2020.18.1.e8
10.1038/s41586-020-3034-x

Conditions
Species
Scientific Name Mus musculus
Taxonomy ID 10090
Tissue
Urinary bladder, Non-organ sample
Treatment
-
Sex
Male
Cell Line
-
Age
1 day, 7 days, 8-9 weeks
Cell Type
-
Development Stage
-
Cell Subtype
Basal urothelial cell, Endothelial cell, Erythrocyte, Fibroblast, Intermediate urothelial cell, Keratinocyte, Lymphatic endothelial cell, Macrophage, Mesenchymal stromal cell, Mesothelial cell, Myeloid cell, Myofibroblast, Neuron, Pericyte, Proliferating urothelial cell, Schwann cell, Smooth muscle cell, Unknown, Urothelial cell, Urothelial umbrella cell, Vascular smooth muscle cell
Disease
-
Isolate
-
Disease Stage
-
Genotype
-
Helath State
-

Associated K-BDS/scDB
BioProject
KAP200011
scDB Study
N/A
BioSample
All samples [3]
scDB Data
All Data [3]
KRA
All experiments [3]

Cell Browser
Cell Browse
Cell Browser

Cell-cell interaction
Scatter plot

File
file 목록
File Name Size Type Published Download
SCS2000111_adata_cellType_annotated.h5ad 5,103,247,130 5,103,247,130 h5ad
SCS2000111_cell_metadata.csv 15,497,135 15,497,135 csv
SCS2000111_celltype_Basal urothelial cell_DEG_wilcoxon.csv 3,228,395 3,228,395 csv
SCS2000111_celltype_Endothelial cell_DEG_wilcoxon.csv 3,100,469 3,100,469 csv
SCS2000111_celltype_Erythrocyte_DEG_wilcoxon.csv 2,958,809 2,958,809 csv
SCS2000111_celltype_Fibroblast_DEG_wilcoxon.csv 2,932,909 2,932,909 csv
SCS2000111_celltype_Intermediate urothelial cell_DEG_wilcoxon.csv 1,689,840 1,689,840 csv
SCS2000111_celltype_Keratinocyte_DEG_wilcoxon.csv 3,012,900 3,012,900 csv
SCS2000111_celltype_Lymphatic endothelial cell_DEG_wilcoxon.csv 3,386,632 3,386,632 csv
SCS2000111_celltype_Macrophage_DEG_wilcoxon.csv 2,967,426 2,967,426 csv
SCS2000111_celltype_Mesenchymal stromal cell_DEG_wilcoxon.csv 3,319,624 3,319,624 csv
SCS2000111_celltype_Mesothelial cell_DEG_wilcoxon.csv 3,121,705 3,121,705 csv
SCS2000111_celltype_Myeloid cell_DEG_wilcoxon.csv 3,021,681 3,021,681 csv
SCS2000111_celltype_Myofibroblast_DEG_wilcoxon.csv 2,882,290 2,882,290 csv
SCS2000111_celltype_Neuron_DEG_wilcoxon.csv 2,824,383 2,824,383 csv
SCS2000111_celltype_Pericyte_DEG_wilcoxon.csv 2,911,987 2,911,987 csv
SCS2000111_celltype_Proliferating urothelial cell_DEG_wilcoxon.csv 3,433,777 3,433,777 csv
SCS2000111_celltype_Schwann cell_DEG_wilcoxon.csv 3,003,027 3,003,027 csv
SCS2000111_celltype_Smooth muscle cell_DEG_wilcoxon.csv 3,161,017 3,161,017 csv
SCS2000111_celltype_Unknown_DEG_wilcoxon.csv 2,890,608 2,890,608 csv
SCS2000111_celltype_Urothelial cell_DEG_wilcoxon.csv 3,102,563 3,102,563 csv
SCS2000111_celltype_Urothelial umbrella cell_DEG_wilcoxon.csv 3,311,606 3,311,606 csv
SCS2000111_celltype_Vascular smooth muscle cell_DEG_wilcoxon.csv 3,420,411 3,420,411 csv
SCS2000111_detected_gene_list.csv 204,695 204,695 csv
SCS2000111_hvg_list.csv 44,919 44,919 csv
SCS2000111_leiden_0_DEG_wilcoxon.csv 2,613,300 2,613,300 csv
SCS2000111_leiden_1_DEG_wilcoxon.csv 2,677,959 2,677,959 csv
SCS2000111_leiden_10_DEG_wilcoxon.csv 2,737,158 2,737,158 csv
SCS2000111_leiden_11_DEG_wilcoxon.csv 2,708,513 2,708,513 csv
SCS2000111_leiden_12_DEG_wilcoxon.csv 2,749,997 2,749,997 csv
SCS2000111_leiden_13_DEG_wilcoxon.csv 2,720,606 2,720,606 csv
SCS2000111_leiden_14_DEG_wilcoxon.csv 2,721,629 2,721,629 csv
SCS2000111_leiden_15_DEG_wilcoxon.csv 2,746,541 2,746,541 csv
SCS2000111_leiden_16_DEG_wilcoxon.csv 2,738,781 2,738,781 csv
SCS2000111_leiden_17_DEG_wilcoxon.csv 2,756,737 2,756,737 csv
SCS2000111_leiden_18_DEG_wilcoxon.csv 2,741,135 2,741,135 csv
SCS2000111_leiden_19_DEG_wilcoxon.csv 2,753,203 2,753,203 csv
SCS2000111_leiden_2_DEG_wilcoxon.csv 2,677,402 2,677,402 csv
SCS2000111_leiden_20_DEG_wilcoxon.csv 2,710,463 2,710,463 csv
SCS2000111_leiden_21_DEG_wilcoxon.csv 2,728,105 2,728,105 csv
SCS2000111_leiden_22_DEG_wilcoxon.csv 2,724,854 2,724,854 csv
SCS2000111_leiden_23_DEG_wilcoxon.csv 2,710,641 2,710,641 csv
SCS2000111_leiden_24_DEG_wilcoxon.csv 2,749,095 2,749,095 csv
SCS2000111_leiden_25_DEG_wilcoxon.csv 2,745,939 2,745,939 csv
SCS2000111_leiden_26_DEG_wilcoxon.csv 2,704,159 2,704,159 csv
SCS2000111_leiden_27_DEG_wilcoxon.csv 2,746,832 2,746,832 csv
SCS2000111_leiden_28_DEG_wilcoxon.csv 2,740,134 2,740,134 csv
SCS2000111_leiden_29_DEG_wilcoxon.csv 2,731,059 2,731,059 csv
SCS2000111_leiden_3_DEG_wilcoxon.csv 2,706,812 2,706,812 csv
SCS2000111_leiden_30_DEG_wilcoxon.csv 2,688,419 2,688,419 csv
SCS2000111_leiden_31_DEG_wilcoxon.csv 2,744,099 2,744,099 csv
SCS2000111_leiden_32_DEG_wilcoxon.csv 2,747,261 2,747,261 csv
SCS2000111_leiden_33_DEG_wilcoxon.csv 2,701,897 2,701,897 csv
SCS2000111_leiden_34_DEG_wilcoxon.csv 2,757,124 2,757,124 csv
SCS2000111_leiden_35_DEG_wilcoxon.csv 2,731,336 2,731,336 csv
SCS2000111_leiden_36_DEG_wilcoxon.csv 2,726,508 2,726,508 csv
SCS2000111_leiden_37_DEG_wilcoxon.csv 2,700,804 2,700,804 csv
SCS2000111_leiden_4_DEG_wilcoxon.csv 2,669,502 2,669,502 csv
SCS2000111_leiden_5_DEG_wilcoxon.csv 2,720,466 2,720,466 csv
SCS2000111_leiden_6_DEG_wilcoxon.csv 2,685,420 2,685,420 csv
SCS2000111_leiden_7_DEG_wilcoxon.csv 2,712,177 2,712,177 csv
SCS2000111_leiden_8_DEG_wilcoxon.csv 2,689,741 2,689,741 csv
SCS2000111_leiden_9_DEG_wilcoxon.csv 2,697,657 2,697,657 csv
SCS2000111_pca_embeddings.csv 18,096,214 18,096,214 csv
SCS2000111_tsne_embeddings.csv 1,814,448 1,814,448 csv
SCS2000111_umap_embeddings.csv 1,804,165 1,804,165 csv
SCS2000111_valiDrops_filtered_mtx.tar.gz 299,848,835 299,848,835 gz