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Data pat10
Data Information
Accession
 SCD23562960
Date and Organization
Processed date 2022-01-01
Oranization Yonsei University College of Medicine
Library Construction
 Single cell sample preparation for constructing libraries and sequencing was processed in the use of the Chromium controller according to the 10x Single Cell 3??v2 protocol 10x Genomics. To acquire 10,000 targeted cells, the cells were diluted in nuclease-free water and mixed with master mix. Thereafter, the single cell suspension was loaded with Single Cell 3??Gel Beads and Partitioning Oil GEM into a Single Cell 3??Chip. Following to generate the GEMs, single cells were uniquely barcoded and subsequently cDNAs were used to construct libraries according to the manufacturer's instructions. The libraries were sequenced using HiSeq 2500 Illumina
Conditions
Species
Scientific Name Homo sapiens
Taxonomy ID 9606
Tissue
 Lung
Treatment
 -
Sex
 Male
Cell Line
 -
Age
 -
Cell Type
 Tumor-infiltrating lymphocytes (TILs)
Development Stage
 -
Cell Subtype
 B cell, CD4 T cell, CD8 T cell, Epithelial cell, Erythrocyte, Erythroid cell, Macrophage, Mast cell, NK cell, Neutrophil, Plasma cell, Regulatory T cell, T cell, Unknown
Disease
 Non-small cell lung carcinoma
Isolate
 Patient10
Disease Stage
 -
Genotype
 -
Helath State
 -
Associated K-BDS/scDB
BioProject
 KAP200016
scDB Study
 SCS2000160
BioSample
 All samples [1]
scDB Data
 All Data [1]
KRA
 All experiments [1]
Cell Browser
Cell Browse
Cell Browser
Cell Browser
Cell-cell interaction
Scatter plot
File
file 목록
File Name Size Type Published Download
SCD23562960_adata_cellType_annotated.h5ad 476,542,468 476,542,468 h5ad
SCD23562960_cell_metadata.csv 1,893,140 1,893,140 csv
SCD23562960_celltype_B cell_DEG_wilcoxon.csv 2,598,018 2,598,018 csv
SCD23562960_celltype_CD4 T cell_DEG_wilcoxon.csv 2,747,535 2,747,535 csv
SCD23562960_celltype_CD8 T cell_DEG_wilcoxon.csv 2,702,961 2,702,961 csv
SCD23562960_celltype_Erythrocyte_DEG_wilcoxon.csv 2,729,879 2,729,879 csv
SCD23562960_celltype_Erythroid cell_DEG_wilcoxon.csv 2,837,936 2,837,936 csv
SCD23562960_celltype_Macrophage_DEG_wilcoxon.csv 2,713,141 2,713,141 csv
SCD23562960_celltype_Mast cell_DEG_wilcoxon.csv 2,738,219 2,738,219 csv
SCD23562960_celltype_Neutrophil_DEG_wilcoxon.csv 2,738,458 2,738,458 csv
SCD23562960_celltype_NK cell_DEG_wilcoxon.csv 2,676,326 2,676,326 csv
SCD23562960_celltype_Regulatory T cell_DEG_wilcoxon.csv 2,870,632 2,870,632 csv
SCD23562960_celltype_T cell_DEG_wilcoxon.csv 2,622,779 2,622,779 csv
SCD23562960_celltype_Unknown_DEG_wilcoxon.csv 2,674,704 2,674,704 csv
SCD23562960_detected_gene_list.csv 225,374 225,374 csv
SCD23562960_hvg_list.csv 31,947 31,947 csv
SCD23562960_leiden_0_DEG_wilcoxon.csv 2,521,822 2,521,822 csv
SCD23562960_leiden_1_DEG_wilcoxon.csv 2,518,500 2,518,500 csv
SCD23562960_leiden_10_DEG_wilcoxon.csv 2,557,311 2,557,311 csv
SCD23562960_leiden_11_DEG_wilcoxon.csv 2,497,700 2,497,700 csv
SCD23562960_leiden_12_DEG_wilcoxon.csv 2,517,304 2,517,304 csv
SCD23562960_leiden_13_DEG_wilcoxon.csv 2,537,824 2,537,824 csv
SCD23562960_leiden_14_DEG_wilcoxon.csv 2,512,507 2,512,507 csv
SCD23562960_leiden_15_DEG_wilcoxon.csv 2,536,986 2,536,986 csv
SCD23562960_leiden_16_DEG_wilcoxon.csv 2,562,664 2,562,664 csv
SCD23562960_leiden_17_DEG_wilcoxon.csv 2,560,295 2,560,295 csv
SCD23562960_leiden_2_DEG_wilcoxon.csv 2,469,366 2,469,366 csv
SCD23562960_leiden_3_DEG_wilcoxon.csv 2,521,328 2,521,328 csv
SCD23562960_leiden_4_DEG_wilcoxon.csv 2,479,087 2,479,087 csv
SCD23562960_leiden_5_DEG_wilcoxon.csv 2,500,244 2,500,244 csv
SCD23562960_leiden_6_DEG_wilcoxon.csv 2,495,259 2,495,259 csv
SCD23562960_leiden_7_DEG_wilcoxon.csv 2,514,999 2,514,999 csv
SCD23562960_leiden_8_DEG_wilcoxon.csv 2,504,681 2,504,681 csv
SCD23562960_leiden_9_DEG_wilcoxon.csv 2,499,110 2,499,110 csv
SCD23562960_pca_embeddings.csv 2,213,244 2,213,244 csv
SCD23562960_raw_feature_bc_matrix.tar.gz 27,426,206 27,426,206 gz
SCD23562960_tsne_embeddings.csv 219,848 219,848 csv
SCD23562960_umap_embeddings.csv 217,010 217,010 csv
Analysis pipeline(v2025.12)