Shortcuts to body

이전 사이트 이동 logo

LOGIN JOIN

Data

Go Back
Data pat9
Data Information
Accession
 SCD23562950
Date and Organization
Processed date 2022-01-01
Oranization Yonsei University College of Medicine
Library Construction
 Single cell sample preparation for constructing libraries and sequencing was processed in the use of the Chromium controller according to the 10x Single Cell 3??v2 protocol 10x Genomics. To acquire 10,000 targeted cells, the cells were diluted in nuclease-free water and mixed with master mix. Thereafter, the single cell suspension was loaded with Single Cell 3??Gel Beads and Partitioning Oil GEM into a Single Cell 3??Chip. Following to generate the GEMs, single cells were uniquely barcoded and subsequently cDNAs were used to construct libraries according to the manufacturer's instructions. The libraries were sequenced using HiSeq 2500 Illumina
Conditions
Species
Scientific Name Homo sapiens
Taxonomy ID 9606
Tissue
 Lung
Treatment
 -
Sex
 Male
Cell Line
 -
Age
 -
Cell Type
 Tumor-infiltrating lymphocytes (TILs)
Development Stage
 -
Cell Subtype
 B cell, CD4 T cell, CD8 T cell, Epithelial cell, Erythrocyte, Erythroid cell, Macrophage, Mast cell, NK cell, Neutrophil, Plasma cell, Plasmacytoid dendritic cell, Regulatory T cell, T cell, Unknown
Disease
 Non-small cell lung carcinoma
Isolate
 Patient9
Disease Stage
 -
Genotype
 -
Helath State
 -
Associated K-BDS/scDB
BioProject
 KAP200016
scDB Study
 SCS2000160
BioSample
 All samples [1]
scDB Data
 All Data [1]
KRA
 All experiments [1]
Cell Browser
Cell Browse
Cell Browser
Cell Browser
Cell-cell interaction
Scatter plot
File
file 목록
File Name Size Type Published Download
SCD23562950_adata_cellType_annotated.h5ad 446,648,487 446,648,487 h5ad
SCD23562950_cell_metadata.csv 1,801,010 1,801,010 csv
SCD23562950_celltype_B cell_DEG_wilcoxon.csv 2,586,511 2,586,511 csv
SCD23562950_celltype_CD4 T cell_DEG_wilcoxon.csv 2,711,628 2,711,628 csv
SCD23562950_celltype_CD8 T cell_DEG_wilcoxon.csv 2,705,387 2,705,387 csv
SCD23562950_celltype_Erythrocyte_DEG_wilcoxon.csv 2,718,398 2,718,398 csv
SCD23562950_celltype_Erythroid cell_DEG_wilcoxon.csv 2,802,189 2,802,189 csv
SCD23562950_celltype_Macrophage_DEG_wilcoxon.csv 2,716,830 2,716,830 csv
SCD23562950_celltype_Neutrophil_DEG_wilcoxon.csv 2,673,207 2,673,207 csv
SCD23562950_celltype_NK cell_DEG_wilcoxon.csv 2,612,320 2,612,320 csv
SCD23562950_celltype_Plasma cell_DEG_wilcoxon.csv 2,752,270 2,752,270 csv
SCD23562950_celltype_Plasmacytoid dendritic cell_DEG_wilcoxon.csv 3,117,558 3,117,558 csv
SCD23562950_celltype_Regulatory T cell_DEG_wilcoxon.csv 2,855,080 2,855,080 csv
SCD23562950_celltype_T cell_DEG_wilcoxon.csv 2,609,112 2,609,112 csv
SCD23562950_celltype_Unknown_DEG_wilcoxon.csv 2,592,133 2,592,133 csv
SCD23562950_detected_gene_list.csv 221,321 221,321 csv
SCD23562950_hvg_list.csv 34,306 34,306 csv
SCD23562950_leiden_0_DEG_wilcoxon.csv 2,488,795 2,488,795 csv
SCD23562950_leiden_1_DEG_wilcoxon.csv 2,463,712 2,463,712 csv
SCD23562950_leiden_10_DEG_wilcoxon.csv 2,503,196 2,503,196 csv
SCD23562950_leiden_11_DEG_wilcoxon.csv 2,487,449 2,487,449 csv
SCD23562950_leiden_12_DEG_wilcoxon.csv 2,473,106 2,473,106 csv
SCD23562950_leiden_13_DEG_wilcoxon.csv 2,475,077 2,475,077 csv
SCD23562950_leiden_14_DEG_wilcoxon.csv 2,518,708 2,518,708 csv
SCD23562950_leiden_15_DEG_wilcoxon.csv 2,504,995 2,504,995 csv
SCD23562950_leiden_17_DEG_wilcoxon.csv 2,527,724 2,527,724 csv
SCD23562950_leiden_18_DEG_wilcoxon.csv 2,496,301 2,496,301 csv
SCD23562950_leiden_19_DEG_wilcoxon.csv 2,529,392 2,529,392 csv
SCD23562950_leiden_2_DEG_wilcoxon.csv 2,458,950 2,458,950 csv
SCD23562950_leiden_20_DEG_wilcoxon.csv 2,498,406 2,498,406 csv
SCD23562950_leiden_3_DEG_wilcoxon.csv 2,469,010 2,469,010 csv
SCD23562950_leiden_4_DEG_wilcoxon.csv 2,470,736 2,470,736 csv
SCD23562950_leiden_5_DEG_wilcoxon.csv 2,458,954 2,458,954 csv
SCD23562950_leiden_6_DEG_wilcoxon.csv 2,442,292 2,442,292 csv
SCD23562950_leiden_7_DEG_wilcoxon.csv 47,851 47,851 csv
SCD23562950_leiden_8_DEG_wilcoxon.csv 2,470,327 2,470,327 csv
SCD23562950_leiden_9_DEG_wilcoxon.csv 2,479,810 2,479,810 csv
SCD23562950_pca_embeddings.csv 2,108,032 2,108,032 csv
SCD23562950_raw_feature_bc_matrix.tar.gz 31,554,826 31,554,826 gz
SCD23562950_tsne_embeddings.csv 210,155 210,155 csv
SCD23562950_umap_embeddings.csv 205,821 205,821 csv
Analysis pipeline(v2025.12)