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Data pat8
Data Information
Accession
 SCD23562940
Date and Organization
Processed date 2022-01-01
Oranization Yonsei University College of Medicine
Library Construction
 Single cell sample preparation for constructing libraries and sequencing was processed in the use of the Chromium controller according to the 10x Single Cell 3??v2 protocol 10x Genomics. To acquire 10,000 targeted cells, the cells were diluted in nuclease-free water and mixed with master mix. Thereafter, the single cell suspension was loaded with Single Cell 3??Gel Beads and Partitioning Oil GEM into a Single Cell 3??Chip. Following to generate the GEMs, single cells were uniquely barcoded and subsequently cDNAs were used to construct libraries according to the manufacturer's instructions. The libraries were sequenced using HiSeq 2500 Illumina
Conditions
Species
Scientific Name Homo sapiens
Taxonomy ID 9606
Tissue
 Lung
Treatment
 -
Sex
 Female
Cell Line
 -
Age
 -
Cell Type
 Tumor-infiltrating lymphocytes (TILs)
Development Stage
 -
Cell Subtype
 B cell, CD4 T cell, CD8 T cell, Epithelial cell, Erythrocyte, Erythroid cell, Macrophage, Mast cell, NK cell, Neutrophil, Plasmacytoid dendritic cell, Regulatory T cell, T cell, Unknown
Disease
 Non-small cell lung carcinoma
Isolate
 Patient8
Disease Stage
 -
Genotype
 -
Helath State
 -
Associated K-BDS/scDB
BioProject
 KAP200016
scDB Study
 SCS2000160
BioSample
 All samples [1]
scDB Data
 All Data [1]
KRA
 All experiments [1]
Cell Browser
Cell Browse
Cell Browser
Cell Browser
Cell-cell interaction
Scatter plot
File
file 목록
File Name Size Type Published Download
SCD23562940_adata_cellType_annotated.h5ad 384,247,448 384,247,448 h5ad
SCD23562940_cell_metadata.csv 1,505,986 1,505,986 csv
SCD23562940_celltype_B cell_DEG_wilcoxon.csv 2,641,759 2,641,759 csv
SCD23562940_celltype_CD4 T cell_DEG_wilcoxon.csv 2,737,416 2,737,416 csv
SCD23562940_celltype_CD8 T cell_DEG_wilcoxon.csv 2,739,725 2,739,725 csv
SCD23562940_celltype_Epithelial cell_DEG_wilcoxon.csv 2,905,509 2,905,509 csv
SCD23562940_celltype_Erythrocyte_DEG_wilcoxon.csv 2,749,184 2,749,184 csv
SCD23562940_celltype_Erythroid cell_DEG_wilcoxon.csv 2,854,739 2,854,739 csv
SCD23562940_celltype_Neutrophil_DEG_wilcoxon.csv 2,755,060 2,755,060 csv
SCD23562940_celltype_NK cell_DEG_wilcoxon.csv 2,678,721 2,678,721 csv
SCD23562940_celltype_Regulatory T cell_DEG_wilcoxon.csv 2,940,561 2,940,561 csv
SCD23562940_celltype_T cell_DEG_wilcoxon.csv 2,664,768 2,664,768 csv
SCD23562940_celltype_Unknown_DEG_wilcoxon.csv 2,635,090 2,635,090 csv
SCD23562940_detected_gene_list.csv 226,437 226,437 csv
SCD23562940_hvg_list.csv 29,389 29,389 csv
SCD23562940_leiden_0_DEG_wilcoxon.csv 2,510,299 2,510,299 csv
SCD23562940_leiden_1_DEG_wilcoxon.csv 2,540,659 2,540,659 csv
SCD23562940_leiden_10_DEG_wilcoxon.csv 2,550,117 2,550,117 csv
SCD23562940_leiden_11_DEG_wilcoxon.csv 2,540,821 2,540,821 csv
SCD23562940_leiden_13_DEG_wilcoxon.csv 2,553,178 2,553,178 csv
SCD23562940_leiden_15_DEG_wilcoxon.csv 2,551,917 2,551,917 csv
SCD23562940_leiden_17_DEG_wilcoxon.csv 2,575,229 2,575,229 csv
SCD23562940_leiden_2_DEG_wilcoxon.csv 2,536,815 2,536,815 csv
SCD23562940_leiden_21_DEG_wilcoxon.csv 2,577,465 2,577,465 csv
SCD23562940_leiden_3_DEG_wilcoxon.csv 2,486,911 2,486,911 csv
SCD23562940_leiden_4_DEG_wilcoxon.csv 2,496,832 2,496,832 csv
SCD23562940_leiden_5_DEG_wilcoxon.csv 2,528,602 2,528,602 csv
SCD23562940_leiden_6_DEG_wilcoxon.csv 2,533,417 2,533,417 csv
SCD23562940_leiden_7_DEG_wilcoxon.csv 2,536,193 2,536,193 csv
SCD23562940_leiden_8_DEG_wilcoxon.csv 2,496,356 2,496,356 csv
SCD23562940_leiden_9_DEG_wilcoxon.csv 2,545,069 2,545,069 csv
SCD23562940_pca_embeddings.csv 1,761,525 1,761,525 csv
SCD23562940_raw_feature_bc_matrix.tar.gz 28,044,563 28,044,563 gz
SCD23562940_tsne_embeddings.csv 175,568 175,568 csv
SCD23562940_umap_embeddings.csv 175,339 175,339 csv
Analysis pipeline(v2025.12)