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Data pat7
Data Information
Accession
 SCD23562930
Date and Organization
Processed date 2022-01-01
Oranization Yonsei University College of Medicine
Library Construction
 Single cell sample preparation for constructing libraries and sequencing was processed in the use of the Chromium controller according to the 10x Single Cell 3??v2 protocol 10x Genomics. To acquire 10,000 targeted cells, the cells were diluted in nuclease-free water and mixed with master mix. Thereafter, the single cell suspension was loaded with Single Cell 3??Gel Beads and Partitioning Oil GEM into a Single Cell 3??Chip. Following to generate the GEMs, single cells were uniquely barcoded and subsequently cDNAs were used to construct libraries according to the manufacturer's instructions. The libraries were sequenced using HiSeq 2500 Illumina
Conditions
Species
Scientific Name Homo sapiens
Taxonomy ID 9606
Tissue
 Lung
Treatment
 -
Sex
 Female
Cell Line
 -
Age
 -
Cell Type
 Tumor-infiltrating lymphocytes (TILs)
Development Stage
 -
Cell Subtype
 B cell, CD4 T cell, CD8 T cell, Erythrocyte, Erythroid cell, Macrophage, Mast cell, NK cell, Neutrophil, Regulatory T cell, T cell, Unknown
Disease
 Non-small cell lung carcinoma
Isolate
 Patient7
Disease Stage
 -
Genotype
 -
Helath State
 -
Associated K-BDS/scDB
BioProject
 KAP200016
scDB Study
 SCS2000160
BioSample
 All samples [1]
scDB Data
 All Data [1]
KRA
 All experiments [1]
Cell Browser
Cell Browse
Cell Browser
Cell Browser
Cell-cell interaction
Scatter plot
File
file 목록
File Name Size Type Published Download
SCD23562930_adata_cellType_annotated.h5ad 672,508,413 672,508,413 h5ad
SCD23562930_cell_metadata.csv 2,613,831 2,613,831 csv
SCD23562930_celltype_B cell_DEG_wilcoxon.csv 2,722,830 2,722,830 csv
SCD23562930_celltype_CD4 T cell_DEG_wilcoxon.csv 2,814,017 2,814,017 csv
SCD23562930_celltype_CD8 T cell_DEG_wilcoxon.csv 140,917 140,917 csv
SCD23562930_celltype_Erythrocyte_DEG_wilcoxon.csv 2,853,528 2,853,528 csv
SCD23562930_celltype_Erythroid cell_DEG_wilcoxon.csv 2,945,098 2,945,098 csv
SCD23562930_celltype_Macrophage_DEG_wilcoxon.csv 2,803,116 2,803,116 csv
SCD23562930_celltype_Neutrophil_DEG_wilcoxon.csv 2,843,881 2,843,881 csv
SCD23562930_celltype_NK cell_DEG_wilcoxon.csv 163,623 163,623 csv
SCD23562930_celltype_Regulatory T cell_DEG_wilcoxon.csv 3,017,607 3,017,607 csv
SCD23562930_celltype_T cell_DEG_wilcoxon.csv 2,733,540 2,733,540 csv
SCD23562930_celltype_Unknown_DEG_wilcoxon.csv 2,771,261 2,771,261 csv
SCD23562930_detected_gene_list.csv 235,943 235,943 csv
SCD23562930_hvg_list.csv 38,467 38,467 csv
SCD23562930_leiden_0_DEG_wilcoxon.csv 2,580,024 2,580,024 csv
SCD23562930_leiden_1_DEG_wilcoxon.csv 2,594,650 2,594,650 csv
SCD23562930_leiden_10_DEG_wilcoxon.csv 2,598,269 2,598,269 csv
SCD23562930_leiden_11_DEG_wilcoxon.csv 2,618,832 2,618,832 csv
SCD23562930_leiden_13_DEG_wilcoxon.csv 2,635,887 2,635,887 csv
SCD23562930_leiden_14_DEG_wilcoxon.csv 2,595,122 2,595,122 csv
SCD23562930_leiden_15_DEG_wilcoxon.csv 2,633,108 2,633,108 csv
SCD23562930_leiden_17_DEG_wilcoxon.csv 2,632,538 2,632,538 csv
SCD23562930_leiden_2_DEG_wilcoxon.csv 2,601,621 2,601,621 csv
SCD23562930_leiden_3_DEG_wilcoxon.csv 2,579,290 2,579,290 csv
SCD23562930_leiden_4_DEG_wilcoxon.csv 2,593,536 2,593,536 csv
SCD23562930_leiden_5_DEG_wilcoxon.csv 2,591,286 2,591,286 csv
SCD23562930_leiden_6_DEG_wilcoxon.csv 2,611,008 2,611,008 csv
SCD23562930_leiden_7_DEG_wilcoxon.csv 2,557,688 2,557,688 csv
SCD23562930_leiden_8_DEG_wilcoxon.csv 2,591,936 2,591,936 csv
SCD23562930_leiden_9_DEG_wilcoxon.csv 2,595,071 2,595,071 csv
SCD23562930_pca_embeddings.csv 3,088,249 3,088,249 csv
SCD23562930_raw_feature_bc_matrix.tar.gz 29,145,639 29,145,639 gz
SCD23562930_tsne_embeddings.csv 307,881 307,881 csv
SCD23562930_umap_embeddings.csv 303,474 303,474 csv
Analysis pipeline(v2025.12)