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Data pat6
Data Information
Accession
 SCD23562920
Date and Organization
Processed date 2022-01-01
Oranization Yonsei University College of Medicine
Library Construction
 Single cell sample preparation for constructing libraries and sequencing was processed in the use of the Chromium controller according to the 10x Single Cell 3??v2 protocol 10x Genomics. To acquire 10,000 targeted cells, the cells were diluted in nuclease-free water and mixed with master mix. Thereafter, the single cell suspension was loaded with Single Cell 3??Gel Beads and Partitioning Oil GEM into a Single Cell 3??Chip. Following to generate the GEMs, single cells were uniquely barcoded and subsequently cDNAs were used to construct libraries according to the manufacturer's instructions. The libraries were sequenced using HiSeq 2500 Illumina
Conditions
Species
Scientific Name Homo sapiens
Taxonomy ID 9606
Tissue
 Lung
Treatment
 -
Sex
 Male
Cell Line
 -
Age
 -
Cell Type
 Tumor-infiltrating lymphocytes (TILs)
Development Stage
 -
Cell Subtype
 B cell, CD4 T cell, CD8 T cell, Epithelial cell, Erythrocyte, Erythroid cell, Macrophage, Mast cell, NK cell, Neutrophil, Plasma cell, Plasmacytoid dendritic cell, Regulatory T cell, T cell, Unknown
Disease
 Non-small cell lung carcinoma
Isolate
 Patient6
Disease Stage
 -
Genotype
 -
Helath State
 -
Associated K-BDS/scDB
BioProject
 KAP200016
scDB Study
 SCS2000160
BioSample
 All samples [1]
scDB Data
 All Data [1]
KRA
 All experiments [1]
Cell Browser
Cell Browse
Cell Browser
Cell Browser
Cell-cell interaction
Scatter plot
File
file 목록
File Name Size Type Published Download
SCD23562920_adata_cellType_annotated.h5ad 742,497,823 742,497,823 h5ad
SCD23562920_cell_metadata.csv 2,665,095 2,665,095 csv
SCD23562920_celltype_B cell_DEG_wilcoxon.csv 201,125 201,125 csv
SCD23562920_celltype_CD4 T cell_DEG_wilcoxon.csv 2,975,154 2,975,154 csv
SCD23562920_celltype_CD8 T cell_DEG_wilcoxon.csv 2,994,074 2,994,074 csv
SCD23562920_celltype_Epithelial cell_DEG_wilcoxon.csv 3,117,173 3,117,173 csv
SCD23562920_celltype_Erythrocyte_DEG_wilcoxon.csv 3,007,229 3,007,229 csv
SCD23562920_celltype_Erythroid cell_DEG_wilcoxon.csv 3,070,053 3,070,053 csv
SCD23562920_celltype_Macrophage_DEG_wilcoxon.csv 2,954,453 2,954,453 csv
SCD23562920_celltype_Mast cell_DEG_wilcoxon.csv 2,944,171 2,944,171 csv
SCD23562920_celltype_Neutrophil_DEG_wilcoxon.csv 2,971,604 2,971,604 csv
SCD23562920_celltype_NK cell_DEG_wilcoxon.csv 2,921,032 2,921,032 csv
SCD23562920_celltype_Plasma cell_DEG_wilcoxon.csv 3,002,940 3,002,940 csv
SCD23562920_celltype_Plasmacytoid dendritic cell_DEG_wilcoxon.csv 3,402,743 3,402,743 csv
SCD23562920_celltype_Regulatory T cell_DEG_wilcoxon.csv 3,131,432 3,131,432 csv
SCD23562920_celltype_T cell_DEG_wilcoxon.csv 299,891 299,891 csv
SCD23562920_celltype_Unknown_DEG_wilcoxon.csv 174,164 174,164 csv
SCD23562920_detected_gene_list.csv 250,489 250,489 csv
SCD23562920_hvg_list.csv 34,044 34,044 csv
SCD23562920_leiden_0_DEG_wilcoxon.csv 2,729,623 2,729,623 csv
SCD23562920_leiden_1_DEG_wilcoxon.csv 2,697,627 2,697,627 csv
SCD23562920_leiden_10_DEG_wilcoxon.csv 2,766,703 2,766,703 csv
SCD23562920_leiden_11_DEG_wilcoxon.csv 193,139 193,139 csv
SCD23562920_leiden_12_DEG_wilcoxon.csv 2,767,212 2,767,212 csv
SCD23562920_leiden_13_DEG_wilcoxon.csv 2,753,122 2,753,122 csv
SCD23562920_leiden_14_DEG_wilcoxon.csv 2,735,971 2,735,971 csv
SCD23562920_leiden_15_DEG_wilcoxon.csv 2,742,331 2,742,331 csv
SCD23562920_leiden_16_DEG_wilcoxon.csv 2,753,006 2,753,006 csv
SCD23562920_leiden_17_DEG_wilcoxon.csv 2,785,876 2,785,876 csv
SCD23562920_leiden_18_DEG_wilcoxon.csv 2,731,150 2,731,150 csv
SCD23562920_leiden_19_DEG_wilcoxon.csv 2,757,148 2,757,148 csv
SCD23562920_leiden_2_DEG_wilcoxon.csv 2,694,470 2,694,470 csv
SCD23562920_leiden_20_DEG_wilcoxon.csv 2,719,991 2,719,991 csv
SCD23562920_leiden_21_DEG_wilcoxon.csv 2,762,141 2,762,141 csv
SCD23562920_leiden_3_DEG_wilcoxon.csv 52,788 52,788 csv
SCD23562920_leiden_4_DEG_wilcoxon.csv 2,734,127 2,734,127 csv
SCD23562920_leiden_5_DEG_wilcoxon.csv 2,751,643 2,751,643 csv
SCD23562920_leiden_6_DEG_wilcoxon.csv 2,675,221 2,675,221 csv
SCD23562920_leiden_7_DEG_wilcoxon.csv 2,755,393 2,755,393 csv
SCD23562920_leiden_8_DEG_wilcoxon.csv 2,736,255 2,736,255 csv
SCD23562920_leiden_9_DEG_wilcoxon.csv 2,736,455 2,736,455 csv
SCD23562920_pca_embeddings.csv 3,102,679 3,102,679 csv
SCD23562920_raw_feature_bc_matrix.tar.gz 39,634,295 39,634,295 gz
SCD23562920_tsne_embeddings.csv 310,567 310,567 csv
SCD23562920_umap_embeddings.csv 308,570 308,570 csv
Analysis pipeline(v2025.12)