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Data pat5
Data Information
Accession
 SCD23562910
Date and Organization
Processed date 2022-01-01
Oranization Yonsei University College of Medicine
Library Construction
 Single cell sample preparation for constructing libraries and sequencing was processed in the use of the Chromium controller according to the 10x Single Cell 3??v2 protocol 10x Genomics. To acquire 10,000 targeted cells, the cells were diluted in nuclease-free water and mixed with master mix. Thereafter, the single cell suspension was loaded with Single Cell 3??Gel Beads and Partitioning Oil GEM into a Single Cell 3??Chip. Following to generate the GEMs, single cells were uniquely barcoded and subsequently cDNAs were used to construct libraries according to the manufacturer's instructions. The libraries were sequenced using HiSeq 2500 Illumina
Conditions
Species
Scientific Name Homo sapiens
Taxonomy ID 9606
Tissue
 Lung
Treatment
 -
Sex
 Female
Cell Line
 -
Age
 -
Cell Type
 Tumor-infiltrating lymphocytes (TILs)
Development Stage
 -
Cell Subtype
 B cell, CD4 T cell, CD8 T cell, Epithelial cell, Erythrocyte, Erythroid cell, Macrophage, Mast cell, NK cell, Neutrophil, Plasma cell, Plasmacytoid dendritic cell, Regulatory T cell, T cell, Unknown
Disease
 Non-small cell lung carcinoma
Isolate
 Patient5
Disease Stage
 -
Genotype
 -
Helath State
 -
Associated K-BDS/scDB
BioProject
 KAP200016
scDB Study
 SCS2000160
BioSample
 All samples [1]
scDB Data
 All Data [1]
KRA
 All experiments [1]
Cell Browser
Cell Browse
Cell Browser
Cell Browser
Cell-cell interaction
Scatter plot
File
file 목록
File Name Size Type Published Download
SCD23562910_adata_cellType_annotated.h5ad 432,344,761 432,344,761 h5ad
SCD23562910_cell_metadata.csv 1,711,152 1,711,152 csv
SCD23562910_celltype_B cell_DEG_wilcoxon.csv 2,680,761 2,680,761 csv
SCD23562910_celltype_CD4 T cell_DEG_wilcoxon.csv 2,767,644 2,767,644 csv
SCD23562910_celltype_CD8 T cell_DEG_wilcoxon.csv 2,764,567 2,764,567 csv
SCD23562910_celltype_Epithelial cell_DEG_wilcoxon.csv 2,944,944 2,944,944 csv
SCD23562910_celltype_Erythrocyte_DEG_wilcoxon.csv 2,797,918 2,797,918 csv
SCD23562910_celltype_Erythroid cell_DEG_wilcoxon.csv 2,883,645 2,883,645 csv
SCD23562910_celltype_Macrophage_DEG_wilcoxon.csv 2,749,232 2,749,232 csv
SCD23562910_celltype_Mast cell_DEG_wilcoxon.csv 2,745,965 2,745,965 csv
SCD23562910_celltype_Neutrophil_DEG_wilcoxon.csv 2,790,468 2,790,468 csv
SCD23562910_celltype_NK cell_DEG_wilcoxon.csv 2,688,530 2,688,530 csv
SCD23562910_celltype_Plasma cell_DEG_wilcoxon.csv 2,801,943 2,801,943 csv
SCD23562910_celltype_Plasmacytoid dendritic cell_DEG_wilcoxon.csv 3,217,277 3,217,277 csv
SCD23562910_celltype_Regulatory T cell_DEG_wilcoxon.csv 2,943,059 2,943,059 csv
SCD23562910_celltype_T cell_DEG_wilcoxon.csv 2,697,046 2,697,046 csv
SCD23562910_celltype_Unknown_DEG_wilcoxon.csv 2,691,045 2,691,045 csv
SCD23562910_detected_gene_list.csv 229,723 229,723 csv
SCD23562910_hvg_list.csv 36,866 36,866 csv
SCD23562910_leiden_0_DEG_wilcoxon.csv 2,537,935 2,537,935 csv
SCD23562910_leiden_1_DEG_wilcoxon.csv 2,563,911 2,563,911 csv
SCD23562910_leiden_10_DEG_wilcoxon.csv 2,554,034 2,554,034 csv
SCD23562910_leiden_11_DEG_wilcoxon.csv 2,578,667 2,578,667 csv
SCD23562910_leiden_13_DEG_wilcoxon.csv 2,586,282 2,586,282 csv
SCD23562910_leiden_14_DEG_wilcoxon.csv 2,545,046 2,545,046 csv
SCD23562910_leiden_15_DEG_wilcoxon.csv 2,577,367 2,577,367 csv
SCD23562910_leiden_16_DEG_wilcoxon.csv 2,567,302 2,567,302 csv
SCD23562910_leiden_17_DEG_wilcoxon.csv 2,573,752 2,573,752 csv
SCD23562910_leiden_19_DEG_wilcoxon.csv 2,572,234 2,572,234 csv
SCD23562910_leiden_2_DEG_wilcoxon.csv 2,534,689 2,534,689 csv
SCD23562910_leiden_20_DEG_wilcoxon.csv 2,579,225 2,579,225 csv
SCD23562910_leiden_21_DEG_wilcoxon.csv 2,613,143 2,613,143 csv
SCD23562910_leiden_3_DEG_wilcoxon.csv 2,568,419 2,568,419 csv
SCD23562910_leiden_4_DEG_wilcoxon.csv 2,542,686 2,542,686 csv
SCD23562910_leiden_5_DEG_wilcoxon.csv 2,566,607 2,566,607 csv
SCD23562910_leiden_6_DEG_wilcoxon.csv 2,510,852 2,510,852 csv
SCD23562910_leiden_7_DEG_wilcoxon.csv 2,570,263 2,570,263 csv
SCD23562910_leiden_8_DEG_wilcoxon.csv 2,550,307 2,550,307 csv
SCD23562910_leiden_9_DEG_wilcoxon.csv 2,574,286 2,574,286 csv
SCD23562910_pca_embeddings.csv 2,002,005 2,002,005 csv
SCD23562910_raw_feature_bc_matrix.tar.gz 21,902,008 21,902,008 gz
SCD23562910_tsne_embeddings.csv 200,357 200,357 csv
SCD23562910_umap_embeddings.csv 195,996 195,996 csv
Analysis pipeline(v2025.12)