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Data pat4
Data Information
Accession
 SCD23562900
Date and Organization
Processed date 2022-01-01
Oranization Yonsei University College of Medicine
Library Construction
 Single cell sample preparation for constructing libraries and sequencing was processed in the use of the Chromium controller according to the 10x Single Cell 3??v2 protocol 10x Genomics. To acquire 10,000 targeted cells, the cells were diluted in nuclease-free water and mixed with master mix. Thereafter, the single cell suspension was loaded with Single Cell 3??Gel Beads and Partitioning Oil GEM into a Single Cell 3??Chip. Following to generate the GEMs, single cells were uniquely barcoded and subsequently cDNAs were used to construct libraries according to the manufacturer's instructions. The libraries were sequenced using HiSeq 2500 Illumina
Conditions
Species
Scientific Name Homo sapiens
Taxonomy ID 9606
Tissue
 Lung
Treatment
 -
Sex
 Male
Cell Line
 -
Age
 -
Cell Type
 Tumor-infiltrating lymphocytes (TILs)
Development Stage
 -
Cell Subtype
 B cell, CD4 T cell, CD8 T cell, Epithelial cell, Erythrocyte, Erythroid cell, Macrophage, Mast cell, NK cell, Neutrophil, Plasma cell, Plasmacytoid dendritic cell, Regulatory T cell, T cell, Unknown
Disease
 Non-small cell lung carcinoma
Isolate
 Patient4
Disease Stage
 -
Genotype
 -
Helath State
 -
Associated K-BDS/scDB
BioProject
 KAP200016
scDB Study
 SCS2000160
BioSample
 All samples [1]
scDB Data
 All Data [1]
KRA
 All experiments [1]
Cell Browser
Cell Browse
Cell Browser
Cell Browser
Cell-cell interaction
Scatter plot
File
file 목록
File Name Size Type Published Download
SCD23562900_adata_cellType_annotated.h5ad 620,010,825 620,010,825 h5ad
SCD23562900_cell_metadata.csv 2,449,233 2,449,233 csv
SCD23562900_celltype_B cell_DEG_wilcoxon.csv 2,641,778 2,641,778 csv
SCD23562900_celltype_CD4 T cell_DEG_wilcoxon.csv 2,766,384 2,766,384 csv
SCD23562900_celltype_CD8 T cell_DEG_wilcoxon.csv 2,708,911 2,708,911 csv
SCD23562900_celltype_Erythrocyte_DEG_wilcoxon.csv 2,768,645 2,768,645 csv
SCD23562900_celltype_Erythroid cell_DEG_wilcoxon.csv 2,828,396 2,828,396 csv
SCD23562900_celltype_Macrophage_DEG_wilcoxon.csv 2,743,156 2,743,156 csv
SCD23562900_celltype_Mast cell_DEG_wilcoxon.csv 2,732,424 2,732,424 csv
SCD23562900_celltype_Neutrophil_DEG_wilcoxon.csv 2,730,067 2,730,067 csv
SCD23562900_celltype_NK cell_DEG_wilcoxon.csv 2,658,215 2,658,215 csv
SCD23562900_celltype_Plasma cell_DEG_wilcoxon.csv 2,767,121 2,767,121 csv
SCD23562900_celltype_Regulatory T cell_DEG_wilcoxon.csv 2,927,534 2,927,534 csv
SCD23562900_celltype_T cell_DEG_wilcoxon.csv 2,630,094 2,630,094 csv
SCD23562900_celltype_Unknown_DEG_wilcoxon.csv 2,667,723 2,667,723 csv
SCD23562900_detected_gene_list.csv 226,819 226,819 csv
SCD23562900_hvg_list.csv 35,005 35,005 csv
SCD23562900_leiden_0_DEG_wilcoxon.csv 2,539,528 2,539,528 csv
SCD23562900_leiden_1_DEG_wilcoxon.csv 2,514,528 2,514,528 csv
SCD23562900_leiden_10_DEG_wilcoxon.csv 160,338 160,338 csv
SCD23562900_leiden_11_DEG_wilcoxon.csv 2,540,952 2,540,952 csv
SCD23562900_leiden_12_DEG_wilcoxon.csv 2,529,169 2,529,169 csv
SCD23562900_leiden_13_DEG_wilcoxon.csv 2,528,417 2,528,417 csv
SCD23562900_leiden_14_DEG_wilcoxon.csv 2,541,514 2,541,514 csv
SCD23562900_leiden_15_DEG_wilcoxon.csv 2,525,922 2,525,922 csv
SCD23562900_leiden_16_DEG_wilcoxon.csv 2,555,980 2,555,980 csv
SCD23562900_leiden_17_DEG_wilcoxon.csv 2,550,836 2,550,836 csv
SCD23562900_leiden_18_DEG_wilcoxon.csv 2,529,089 2,529,089 csv
SCD23562900_leiden_19_DEG_wilcoxon.csv 2,540,265 2,540,265 csv
SCD23562900_leiden_2_DEG_wilcoxon.csv 2,524,236 2,524,236 csv
SCD23562900_leiden_3_DEG_wilcoxon.csv 29,637 29,637 csv
SCD23562900_leiden_4_DEG_wilcoxon.csv 2,516,583 2,516,583 csv
SCD23562900_leiden_5_DEG_wilcoxon.csv 2,537,113 2,537,113 csv
SCD23562900_leiden_6_DEG_wilcoxon.csv 2,506,436 2,506,436 csv
SCD23562900_leiden_7_DEG_wilcoxon.csv 2,510,283 2,510,283 csv
SCD23562900_leiden_8_DEG_wilcoxon.csv 2,496,974 2,496,974 csv
SCD23562900_leiden_9_DEG_wilcoxon.csv 2,511,381 2,511,381 csv
SCD23562900_pca_embeddings.csv 2,842,889 2,842,889 csv
SCD23562900_raw_feature_bc_matrix.tar.gz 35,000,143 35,000,143 gz
SCD23562900_tsne_embeddings.csv 285,209 285,209 csv
SCD23562900_umap_embeddings.csv 280,654 280,654 csv
Analysis pipeline(v2025.12)