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Data pat3
Data Information
Accession
 SCD23562890
Date and Organization
Processed date 2022-01-01
Oranization Yonsei University College of Medicine
Library Construction
 Single cell sample preparation for constructing libraries and sequencing was processed in the use of the Chromium controller according to the 10x Single Cell 3??v2 protocol 10x Genomics. To acquire 10,000 targeted cells, the cells were diluted in nuclease-free water and mixed with master mix. Thereafter, the single cell suspension was loaded with Single Cell 3??Gel Beads and Partitioning Oil GEM into a Single Cell 3??Chip. Following to generate the GEMs, single cells were uniquely barcoded and subsequently cDNAs were used to construct libraries according to the manufacturer's instructions. The libraries were sequenced using HiSeq 2500 Illumina
Conditions
Species
Scientific Name Homo sapiens
Taxonomy ID 9606
Tissue
 Lung
Treatment
 -
Sex
 Female
Cell Line
 -
Age
 -
Cell Type
 Tumor-infiltrating lymphocytes (TILs)
Development Stage
 -
Cell Subtype
 B cell, CD4 T cell, CD8 T cell, Epithelial cell, Erythrocyte, Erythroid cell, Macrophage, NK cell, Regulatory T cell, T cell, Unknown
Disease
 Non-small cell lung carcinoma
Isolate
 Patient3
Disease Stage
 -
Genotype
 -
Helath State
 -
Associated K-BDS/scDB
BioProject
 KAP200016
scDB Study
 SCS2000160
BioSample
 All samples [1]
scDB Data
 All Data [1]
KRA
 All experiments [1]
Cell Browser
Cell Browse
Cell Browser
Cell Browser
Cell-cell interaction
Scatter plot
File
file 목록
File Name Size Type Published Download
SCD23562890_adata_cellType_annotated.h5ad 549,694,965 549,694,965 h5ad
SCD23562890_cell_metadata.csv 2,281,863 2,281,863 csv
SCD23562890_celltype_B cell_DEG_wilcoxon.csv 2,588,453 2,588,453 csv
SCD23562890_celltype_CD4 T cell_DEG_wilcoxon.csv 2,670,698 2,670,698 csv
SCD23562890_celltype_CD8 T cell_DEG_wilcoxon.csv 2,699,775 2,699,775 csv
SCD23562890_celltype_Epithelial cell_DEG_wilcoxon.csv 2,807,614 2,807,614 csv
SCD23562890_celltype_Erythrocyte_DEG_wilcoxon.csv 2,686,212 2,686,212 csv
SCD23562890_celltype_Erythroid cell_DEG_wilcoxon.csv 2,784,623 2,784,623 csv
SCD23562890_celltype_Macrophage_DEG_wilcoxon.csv 2,691,963 2,691,963 csv
SCD23562890_celltype_NK cell_DEG_wilcoxon.csv 2,596,829 2,596,829 csv
SCD23562890_celltype_Regulatory T cell_DEG_wilcoxon.csv 2,810,891 2,810,891 csv
SCD23562890_celltype_T cell_DEG_wilcoxon.csv 2,595,669 2,595,669 csv
SCD23562890_celltype_Unknown_DEG_wilcoxon.csv 2,621,413 2,621,413 csv
SCD23562890_detected_gene_list.csv 220,323 220,323 csv
SCD23562890_hvg_list.csv 21,882 21,882 csv
SCD23562890_leiden_0_DEG_wilcoxon.csv 2,449,278 2,449,278 csv
SCD23562890_leiden_1_DEG_wilcoxon.csv 2,454,507 2,454,507 csv
SCD23562890_leiden_10_DEG_wilcoxon.csv 37,876 37,876 csv
SCD23562890_leiden_11_DEG_wilcoxon.csv 2,490,047 2,490,047 csv
SCD23562890_leiden_14_DEG_wilcoxon.csv 2,495,145 2,495,145 csv
SCD23562890_leiden_15_DEG_wilcoxon.csv 2,489,397 2,489,397 csv
SCD23562890_leiden_17_DEG_wilcoxon.csv 2,483,998 2,483,998 csv
SCD23562890_leiden_18_DEG_wilcoxon.csv 2,460,193 2,460,193 csv
SCD23562890_leiden_2_DEG_wilcoxon.csv 2,417,257 2,417,257 csv
SCD23562890_leiden_21_DEG_wilcoxon.csv 2,487,786 2,487,786 csv
SCD23562890_leiden_3_DEG_wilcoxon.csv 2,450,395 2,450,395 csv
SCD23562890_leiden_4_DEG_wilcoxon.csv 2,440,190 2,440,190 csv
SCD23562890_leiden_5_DEG_wilcoxon.csv 2,470,299 2,470,299 csv
SCD23562890_leiden_6_DEG_wilcoxon.csv 2,450,769 2,450,769 csv
SCD23562890_leiden_7_DEG_wilcoxon.csv 2,430,024 2,430,024 csv
SCD23562890_leiden_8_DEG_wilcoxon.csv 2,459,389 2,459,389 csv
SCD23562890_leiden_9_DEG_wilcoxon.csv 2,455,285 2,455,285 csv
SCD23562890_pca_embeddings.csv 2,672,135 2,672,135 csv
SCD23562890_raw_feature_bc_matrix.tar.gz 24,352,656 24,352,656 gz
SCD23562890_tsne_embeddings.csv 265,870 265,870 csv
SCD23562890_umap_embeddings.csv 259,545 259,545 csv
Analysis pipeline(v2025.12)