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Data pat2
Data Information
Accession
 SCD23562880
Date and Organization
Processed date 2022-01-01
Oranization Yonsei University College of Medicine
Library Construction
 Single cell sample preparation for constructing libraries and sequencing was processed in the use of the Chromium controller according to the 10x Single Cell 3??v2 protocol 10x Genomics. To acquire 10,000 targeted cells, the cells were diluted in nuclease-free water and mixed with master mix. Thereafter, the single cell suspension was loaded with Single Cell 3??Gel Beads and Partitioning Oil GEM into a Single Cell 3??Chip. Following to generate the GEMs, single cells were uniquely barcoded and subsequently cDNAs were used to construct libraries according to the manufacturer's instructions. The libraries were sequenced using HiSeq 2500 Illumina
Conditions
Species
Scientific Name Homo sapiens
Taxonomy ID 9606
Tissue
 Lung
Treatment
 -
Sex
 Female
Cell Line
 -
Age
 -
Cell Type
 Tumor-infiltrating lymphocytes (TILs)
Development Stage
 -
Cell Subtype
 B cell, CD4 T cell, CD8 T cell, Epithelial cell, Erythrocyte, Erythroid cell, Macrophage, NK cell, Regulatory T cell, T cell, Unknown
Disease
 Non-small cell lung carcinoma
Isolate
 Patient2
Disease Stage
 -
Genotype
 -
Helath State
 -
Associated K-BDS/scDB
BioProject
 KAP200016
scDB Study
 SCS2000160
BioSample
 All samples [1]
scDB Data
 All Data [1]
KRA
 All experiments [1]
Cell Browser
Cell Browse
Cell Browser
Cell Browser
Cell-cell interaction
Scatter plot
File
file 목록
File Name Size Type Published Download
SCD23562880_adata_cellType_annotated.h5ad 333,447,864 333,447,864 h5ad
SCD23562880_cell_metadata.csv 1,312,454 1,312,454 csv
SCD23562880_celltype_B cell_DEG_wilcoxon.csv 2,583,702 2,583,702 csv
SCD23562880_celltype_CD4 T cell_DEG_wilcoxon.csv 88,486 88,486 csv
SCD23562880_celltype_CD8 T cell_DEG_wilcoxon.csv 2,692,544 2,692,544 csv
SCD23562880_celltype_Epithelial cell_DEG_wilcoxon.csv 2,801,462 2,801,462 csv
SCD23562880_celltype_Erythrocyte_DEG_wilcoxon.csv 2,682,502 2,682,502 csv
SCD23562880_celltype_Erythroid cell_DEG_wilcoxon.csv 2,783,418 2,783,418 csv
SCD23562880_celltype_NK cell_DEG_wilcoxon.csv 2,604,911 2,604,911 csv
SCD23562880_celltype_Regulatory T cell_DEG_wilcoxon.csv 2,862,608 2,862,608 csv
SCD23562880_celltype_T cell_DEG_wilcoxon.csv 2,541,254 2,541,254 csv
SCD23562880_celltype_Unknown_DEG_wilcoxon.csv 105,449 105,449 csv
SCD23562880_detected_gene_list.csv 219,430 219,430 csv
SCD23562880_hvg_list.csv 29,838 29,838 csv
SCD23562880_leiden_0_DEG_wilcoxon.csv 80,870 80,870 csv
SCD23562880_leiden_1_DEG_wilcoxon.csv 2,452,045 2,452,045 csv
SCD23562880_leiden_10_DEG_wilcoxon.csv 2,452,450 2,452,450 csv
SCD23562880_leiden_11_DEG_wilcoxon.csv 2,485,140 2,485,140 csv
SCD23562880_leiden_15_DEG_wilcoxon.csv 2,487,736 2,487,736 csv
SCD23562880_leiden_17_DEG_wilcoxon.csv 2,490,608 2,490,608 csv
SCD23562880_leiden_2_DEG_wilcoxon.csv 2,468,366 2,468,366 csv
SCD23562880_leiden_21_DEG_wilcoxon.csv 2,481,140 2,481,140 csv
SCD23562880_leiden_3_DEG_wilcoxon.csv 2,457,179 2,457,179 csv
SCD23562880_leiden_4_DEG_wilcoxon.csv 2,436,100 2,436,100 csv
SCD23562880_leiden_5_DEG_wilcoxon.csv 2,479,329 2,479,329 csv
SCD23562880_leiden_6_DEG_wilcoxon.csv 2,450,626 2,450,626 csv
SCD23562880_leiden_7_DEG_wilcoxon.csv 2,452,176 2,452,176 csv
SCD23562880_leiden_8_DEG_wilcoxon.csv 2,460,123 2,460,123 csv
SCD23562880_leiden_9_DEG_wilcoxon.csv 2,478,420 2,478,420 csv
SCD23562880_pca_embeddings.csv 1,526,212 1,526,212 csv
SCD23562880_raw_feature_bc_matrix.tar.gz 19,958,874 19,958,874 gz
SCD23562880_tsne_embeddings.csv 153,102 153,102 csv
SCD23562880_umap_embeddings.csv 151,117 151,117 csv
Analysis pipeline(v2025.12)