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Data pat1
Data Information
Accession
 SCD23562870
Date and Organization
Processed date 2022-01-01
Oranization Yonsei University College of Medicine
Library Construction
 Single cell sample preparation for constructing libraries and sequencing was processed in the use of the Chromium controller according to the 10x Single Cell 3??v2 protocol 10x Genomics. To acquire 10,000 targeted cells, the cells were diluted in nuclease-free water and mixed with master mix. Thereafter, the single cell suspension was loaded with Single Cell 3??Gel Beads and Partitioning Oil GEM into a Single Cell 3??Chip. Following to generate the GEMs, single cells were uniquely barcoded and subsequently cDNAs were used to construct libraries according to the manufacturer's instructions. The libraries were sequenced using HiSeq 2500 Illumina
Conditions
Species
Scientific Name Homo sapiens
Taxonomy ID 9606
Tissue
 Lung
Treatment
 -
Sex
 Male
Cell Line
 -
Age
 -
Cell Type
 Tumor-infiltrating lymphocytes (TILs)
Development Stage
 -
Cell Subtype
 B cell, CD4 T cell, CD8 T cell, Epithelial cell, Erythrocyte, Erythroid cell, Macrophage, Mast cell, NK cell, Neutrophil, Plasma cell, Plasmacytoid dendritic cell, Regulatory T cell, T cell, Unknown
Disease
 Non-small cell lung carcinoma
Isolate
 Patient1
Disease Stage
 -
Genotype
 -
Helath State
 -
Associated K-BDS/scDB
BioProject
 KAP200016
scDB Study
 SCS2000160
BioSample
 All samples [1]
scDB Data
 All Data [1]
KRA
 All experiments [1]
Cell Browser
Cell Browse
Cell Browser
Cell Browser
Cell-cell interaction
Scatter plot
File
file 목록
File Name Size Type Published Download
SCD23562870_adata_cellType_annotated.h5ad 529,678,996 529,678,996 h5ad
SCD23562870_cell_metadata.csv 2,207,075 2,207,075 csv
SCD23562870_celltype_B cell_DEG_wilcoxon.csv 2,577,088 2,577,088 csv
SCD23562870_celltype_CD4 T cell_DEG_wilcoxon.csv 2,674,782 2,674,782 csv
SCD23562870_celltype_CD8 T cell_DEG_wilcoxon.csv 2,691,552 2,691,552 csv
SCD23562870_celltype_Epithelial cell_DEG_wilcoxon.csv 2,794,231 2,794,231 csv
SCD23562870_celltype_Erythrocyte_DEG_wilcoxon.csv 2,708,964 2,708,964 csv
SCD23562870_celltype_Erythroid cell_DEG_wilcoxon.csv 2,791,848 2,791,848 csv
SCD23562870_celltype_Macrophage_DEG_wilcoxon.csv 2,699,178 2,699,178 csv
SCD23562870_celltype_Mast cell_DEG_wilcoxon.csv 2,644,048 2,644,048 csv
SCD23562870_celltype_Neutrophil_DEG_wilcoxon.csv 2,702,805 2,702,805 csv
SCD23562870_celltype_NK cell_DEG_wilcoxon.csv 2,621,259 2,621,259 csv
SCD23562870_celltype_Plasma cell_DEG_wilcoxon.csv 2,720,573 2,720,573 csv
SCD23562870_celltype_Plasmacytoid dendritic cell_DEG_wilcoxon.csv 3,129,033 3,129,033 csv
SCD23562870_celltype_Regulatory T cell_DEG_wilcoxon.csv 2,859,626 2,859,626 csv
SCD23562870_celltype_T cell_DEG_wilcoxon.csv 2,573,949 2,573,949 csv
SCD23562870_celltype_Unknown_DEG_wilcoxon.csv 2,594,239 2,594,239 csv
SCD23562870_detected_gene_list.csv 220,775 220,775 csv
SCD23562870_hvg_list.csv 59,218 59,218 csv
SCD23562870_leiden_0_DEG_wilcoxon.csv 2,451,823 2,451,823 csv
SCD23562870_leiden_1_DEG_wilcoxon.csv 2,450,740 2,450,740 csv
SCD23562870_leiden_10_DEG_wilcoxon.csv 2,461,146 2,461,146 csv
SCD23562870_leiden_11_DEG_wilcoxon.csv 2,477,994 2,477,994 csv
SCD23562870_leiden_12_DEG_wilcoxon.csv 2,496,174 2,496,174 csv
SCD23562870_leiden_13_DEG_wilcoxon.csv 2,504,619 2,504,619 csv
SCD23562870_leiden_14_DEG_wilcoxon.csv 2,500,992 2,500,992 csv
SCD23562870_leiden_15_DEG_wilcoxon.csv 2,494,570 2,494,570 csv
SCD23562870_leiden_16_DEG_wilcoxon.csv 2,470,635 2,470,635 csv
SCD23562870_leiden_17_DEG_wilcoxon.csv 2,514,936 2,514,936 csv
SCD23562870_leiden_18_DEG_wilcoxon.csv 2,512,702 2,512,702 csv
SCD23562870_leiden_19_DEG_wilcoxon.csv 2,497,614 2,497,614 csv
SCD23562870_leiden_2_DEG_wilcoxon.csv 2,463,256 2,463,256 csv
SCD23562870_leiden_20_DEG_wilcoxon.csv 2,509,706 2,509,706 csv
SCD23562870_leiden_21_DEG_wilcoxon.csv 2,472,180 2,472,180 csv
SCD23562870_leiden_3_DEG_wilcoxon.csv 2,450,239 2,450,239 csv
SCD23562870_leiden_4_DEG_wilcoxon.csv 2,461,232 2,461,232 csv
SCD23562870_leiden_5_DEG_wilcoxon.csv 2,450,913 2,450,913 csv
SCD23562870_leiden_6_DEG_wilcoxon.csv 2,493,825 2,493,825 csv
SCD23562870_leiden_7_DEG_wilcoxon.csv 2,441,283 2,441,283 csv
SCD23562870_leiden_8_DEG_wilcoxon.csv 2,466,271 2,466,271 csv
SCD23562870_leiden_9_DEG_wilcoxon.csv 2,475,778 2,475,778 csv
SCD23562870_pca_embeddings.csv 2,646,374 2,646,374 csv
SCD23562870_raw_feature_bc_matrix.tar.gz 21,517,092 21,517,092 gz
SCD23562870_tsne_embeddings.csv 264,128 264,128 csv
SCD23562870_umap_embeddings.csv 262,535 262,535 csv
Analysis pipeline(v2025.12)