Data
Data
Org6789
Data Information
|
Accession
|
SCD21065910 | ||||
|---|---|---|---|---|---|
|
Date and Organization
|
|
||||
|
Library Construction
|
Sample extraction was prepared using Chromium Single cell 3' Reagent Kits v3 10X Genomics according to the manufacturer's protocols. Sequencing library was prepared using Chromium Single cell 3' Reagent Kits v3 10X Genomics according to the manufacturer's protocols. |
Conditions
|
Species
|
|
|---|
Tissue |
Stomach | Treatment |
- |
|---|---|---|---|
Sex |
- | Cell Line |
- |
Age |
- | Cell Type |
Organoid |
Development Stage |
- | Cell Subtype |
Enterocyte, Gastric chief cell, Gastric epithelial cell, Gastric mucous neck cell, Gastric surface mucous cell, Proliferating gastric epithelial cell, Unknown |
Disease |
- | Isolate |
The DNA sequencing library was prepared using the NimbleGen SeqCap EZ Library kit (Seq Cap EZ Exome v3.0 Kit). For library construction, DNA is extracted from a sample. |
Disease Stage |
- | Genotype |
- |
Helath State |
- | ||
Associated K-BDS/scDB
|
BioProject
|
KAP210038 |
scDB Study
|
SCS2100380 |
|---|---|---|---|
|
BioSample
|
All samples [1] |
scDB Data
|
All Data [1] |
|
KRA
|
All experiments [1] | ||
Cell Browser
Cell Browse
Cell Browser
Cell-cell interaction
Scatter plot
| File Name | Size | Type | Published | Download | |
|---|---|---|---|---|---|
| SCD21065910_adata_cellType_annotated.h5ad | 3,220,435,622 3,220,435,622 | h5ad | |||
| SCD21065910_cell_metadata.csv | 7,918,732 7,918,732 | csv | |||
| SCD21065910_celltype_Enterocyte_DEG_wilcoxon.csv | 3,318,158 3,318,158 | csv | |||
| SCD21065910_celltype_Gastric chief cell_DEG_wilcoxon.csv | 348,579 348,579 | csv | |||
| SCD21065910_celltype_Gastric epithelial cell_DEG_wilcoxon.csv | 3,734,779 3,734,779 | csv | |||
| SCD21065910_celltype_Gastric mucous neck cell_DEG_wilcoxon.csv | 3,754,139 3,754,139 | csv | |||
| SCD21065910_celltype_Gastric surface mucous cell_DEG_wilcoxon.csv | 3,864,418 3,864,418 | csv | |||
| SCD21065910_celltype_Proliferating gastric epithelial cell_DEG_wilcoxon.csv | 4,091,583 4,091,583 | csv | |||
| SCD21065910_celltype_Unknown_DEG_wilcoxon.csv | 3,234,223 3,234,223 | csv | |||
| SCD21065910_detected_gene_list.csv | 292,381 292,381 | csv | |||
| SCD21065910_hvg_list.csv | 45,388 45,388 | csv | |||
| SCD21065910_leiden_1_DEG_wilcoxon.csv | 295,996 295,996 | csv | |||
| SCD21065910_leiden_11_DEG_wilcoxon.csv | 3,099,245 3,099,245 | csv | |||
| SCD21065910_leiden_15_DEG_wilcoxon.csv | 3,098,150 3,098,150 | csv | |||
| SCD21065910_leiden_17_DEG_wilcoxon.csv | 3,074,468 3,074,468 | csv | |||
| SCD21065910_leiden_20_DEG_wilcoxon.csv | 3,070,242 3,070,242 | csv | |||
| SCD21065910_leiden_4_DEG_wilcoxon.csv | 2,994,985 2,994,985 | csv | |||
| SCD21065910_leiden_5_DEG_wilcoxon.csv | 3,069,416 3,069,416 | csv | |||
| SCD21065910_leiden_6_DEG_wilcoxon.csv | 3,020,162 3,020,162 | csv | |||
| SCD21065910_pca_embeddings.csv | 9,790,524 9,790,524 | csv | |||
| SCD21065910_raw_feature_bc_matrix.tar.gz | 308,098,994 308,098,994 | gz | |||
| SCD21065910_tsne_embeddings.csv | 985,191 985,191 | csv | |||
| SCD21065910_umap_embeddings.csv | 973,858 973,858 | csv |