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Data 7-days bladder assembloid
Data Information
Accession
 SCD20000030
Date and Organization
Processed date 2020-09-27
Oranization Pohang University of Science and Technology
Library Construction
 Mouse bladder and bladder assembloids were enzymatically dissociated into single cell and cells were resuspended at 1,000 cells/microliter. RNA from was extracted using the 10x Genomics Chromium Single Cell 3? Reagent Kits v3 following the manufacturer?_ instructions. Dissociated single cell suspension was loaded on Chromium Single Cell Chips. We constructed single-cell RNA-seq libraries using the 10x Genomics Chromium Single Cell 3? Reagent Kits v3.
Conditions
Species
Scientific Name Mus musculus
Taxonomy ID 10090
Tissue
 Urinary bladder, Non-organ sample
Treatment
 -
Sex
 -
Cell Line
 -
Age
 7 days
Cell Type
 -
Development Stage
 -
Cell Subtype
 Basal urothelial cell, Endothelial cell, Erythrocyte, Fibroblast, Intermediate urothelial cell, Keratinocyte, Lymphatic endothelial cell, Macrophage, Mesenchymal stromal cell, Mesothelial cell, Myeloid cell, Myofibroblast, Neuron, Pericyte, Proliferating urothelial cell, Schwann cell, Smooth muscle cell, Unknown, Urothelial cell, Urothelial umbrella cell, Vascular smooth muscle cell
Disease
 -
Isolate
 -
Disease Stage
 -
Genotype
 -
Helath State
 -
Associated K-BDS/scDB
BioProject
 KAP200011
scDB Study
 SCS2000111
BioSample
 All samples [1]
scDB Data
 All Data [1]
KRA
 All experiments [1]
Cell Browser
Cell Browse
Cell Browser
Cell Browser
Cell-cell interaction
Scatter plot
File
file 목록
File Name Size Type Published Download
SCD20000030_adata_cellType_annotated.h5ad 1,728,955,836 1,728,955,836 h5ad
SCD20000030_cell_metadata.csv 5,853,313 5,853,313 csv
SCD20000030_celltype_Basal urothelial cell_DEG_wilcoxon.csv 2,997,343 2,997,343 csv
SCD20000030_celltype_Endothelial cell_DEG_wilcoxon.csv 2,870,971 2,870,971 csv
SCD20000030_celltype_Erythrocyte_DEG_wilcoxon.csv 2,759,581 2,759,581 csv
SCD20000030_celltype_Fibroblast_DEG_wilcoxon.csv 2,721,100 2,721,100 csv
SCD20000030_celltype_Intermediate urothelial cell_DEG_wilcoxon.csv 3,165,278 3,165,278 csv
SCD20000030_celltype_Keratinocyte_DEG_wilcoxon.csv 2,779,222 2,779,222 csv
SCD20000030_celltype_Lymphatic endothelial cell_DEG_wilcoxon.csv 3,129,561 3,129,561 csv
SCD20000030_celltype_Macrophage_DEG_wilcoxon.csv 2,735,658 2,735,658 csv
SCD20000030_celltype_Mesenchymal stromal cell_DEG_wilcoxon.csv 3,086,104 3,086,104 csv
SCD20000030_celltype_Mesothelial cell_DEG_wilcoxon.csv 2,895,412 2,895,412 csv
SCD20000030_celltype_Myeloid cell_DEG_wilcoxon.csv 2,758,617 2,758,617 csv
SCD20000030_celltype_Myofibroblast_DEG_wilcoxon.csv 2,795,921 2,795,921 csv
SCD20000030_celltype_Pericyte_DEG_wilcoxon.csv 2,678,152 2,678,152 csv
SCD20000030_celltype_Proliferating urothelial cell_DEG_wilcoxon.csv 3,210,609 3,210,609 csv
SCD20000030_celltype_Schwann cell_DEG_wilcoxon.csv 2,777,782 2,777,782 csv
SCD20000030_celltype_Smooth muscle cell_DEG_wilcoxon.csv 2,930,386 2,930,386 csv
SCD20000030_celltype_Unknown_DEG_wilcoxon.csv 2,646,804 2,646,804 csv
SCD20000030_celltype_Urothelial cell_DEG_wilcoxon.csv 2,837,300 2,837,300 csv
SCD20000030_celltype_Urothelial umbrella cell_DEG_wilcoxon.csv 3,069,238 3,069,238 csv
SCD20000030_celltype_Vascular smooth muscle cell_DEG_wilcoxon.csv 3,173,855 3,173,855 csv
SCD20000030_detected_gene_list.csv 187,330 187,330 csv
SCD20000030_hvg_list.csv 47,058 47,058 csv
SCD20000030_leiden_0_DEG_wilcoxon.csv 2,504,170 2,504,170 csv
SCD20000030_leiden_1_DEG_wilcoxon.csv 2,497,902 2,497,902 csv
SCD20000030_leiden_10_DEG_wilcoxon.csv 2,524,070 2,524,070 csv
SCD20000030_leiden_11_DEG_wilcoxon.csv 2,518,396 2,518,396 csv
SCD20000030_leiden_12_DEG_wilcoxon.csv 2,525,522 2,525,522 csv
SCD20000030_leiden_13_DEG_wilcoxon.csv 2,500,323 2,500,323 csv
SCD20000030_leiden_14_DEG_wilcoxon.csv 2,514,312 2,514,312 csv
SCD20000030_leiden_15_DEG_wilcoxon.csv 2,525,060 2,525,060 csv
SCD20000030_leiden_16_DEG_wilcoxon.csv 2,527,824 2,527,824 csv
SCD20000030_leiden_17_DEG_wilcoxon.csv 2,527,034 2,527,034 csv
SCD20000030_leiden_18_DEG_wilcoxon.csv 2,534,586 2,534,586 csv
SCD20000030_leiden_19_DEG_wilcoxon.csv 2,527,625 2,527,625 csv
SCD20000030_leiden_2_DEG_wilcoxon.csv 2,482,391 2,482,391 csv
SCD20000030_leiden_20_DEG_wilcoxon.csv 2,520,475 2,520,475 csv
SCD20000030_leiden_21_DEG_wilcoxon.csv 2,518,126 2,518,126 csv
SCD20000030_leiden_22_DEG_wilcoxon.csv 2,517,199 2,517,199 csv
SCD20000030_leiden_23_DEG_wilcoxon.csv 2,529,944 2,529,944 csv
SCD20000030_leiden_24_DEG_wilcoxon.csv 2,521,366 2,521,366 csv
SCD20000030_leiden_25_DEG_wilcoxon.csv 2,503,465 2,503,465 csv
SCD20000030_leiden_26_DEG_wilcoxon.csv 2,513,739 2,513,739 csv
SCD20000030_leiden_27_DEG_wilcoxon.csv 2,531,552 2,531,552 csv
SCD20000030_leiden_28_DEG_wilcoxon.csv 2,508,726 2,508,726 csv
SCD20000030_leiden_29_DEG_wilcoxon.csv 2,535,978 2,535,978 csv
SCD20000030_leiden_3_DEG_wilcoxon.csv 2,487,563 2,487,563 csv
SCD20000030_leiden_30_DEG_wilcoxon.csv 2,551,835 2,551,835 csv
SCD20000030_leiden_31_DEG_wilcoxon.csv 2,505,603 2,505,603 csv
SCD20000030_leiden_32_DEG_wilcoxon.csv 2,552,795 2,552,795 csv
SCD20000030_leiden_33_DEG_wilcoxon.csv 2,521,046 2,521,046 csv
SCD20000030_leiden_35_DEG_wilcoxon.csv 2,546,659 2,546,659 csv
SCD20000030_leiden_36_DEG_wilcoxon.csv 2,558,030 2,558,030 csv
SCD20000030_leiden_4_DEG_wilcoxon.csv 2,486,245 2,486,245 csv
SCD20000030_leiden_5_DEG_wilcoxon.csv 2,515,770 2,515,770 csv
SCD20000030_leiden_6_DEG_wilcoxon.csv 2,499,257 2,499,257 csv
SCD20000030_leiden_7_DEG_wilcoxon.csv 2,501,361 2,501,361 csv
SCD20000030_leiden_8_DEG_wilcoxon.csv 2,483,855 2,483,855 csv
SCD20000030_leiden_9_DEG_wilcoxon.csv 2,495,658 2,495,658 csv
SCD20000030_pca_embeddings.csv 6,724,163 6,724,163 csv
SCD20000030_raw_feature_bc_matrix.tar.gz 154,985,382 154,985,382 gz
SCD20000030_tsne_embeddings.csv 674,386 674,386 csv
SCD20000030_umap_embeddings.csv 670,527 670,527 csv
Analysis pipeline(v2025.12)