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Data 1-day bladder assembloid
Data Information
Accession
 SCD20000020
Date and Organization
Processed date 2020-09-27
Oranization Pohang University of Science and Technology
Library Construction
 Mouse bladder and bladder assembloids were enzymatically dissociated into single cell and cells were resuspended at 1,000 cells/microliter. RNA from was extracted using the 10x Genomics Chromium Single Cell 3? Reagent Kits v3 following the manufacturer?_ instructions. Dissociated single cell suspension was loaded on Chromium Single Cell Chips. We constructed single-cell RNA-seq libraries using the 10x Genomics Chromium Single Cell 3? Reagent Kits v3.
Conditions
Species
Scientific Name Mus musculus
Taxonomy ID 10090
Tissue
 Urinary bladder, Non-organ sample
Treatment
 -
Sex
 -
Cell Line
 -
Age
 1 day
Cell Type
 -
Development Stage
 -
Cell Subtype
 Basal urothelial cell, Endothelial cell, Fibroblast, Intermediate urothelial cell, Keratinocyte, Lymphatic endothelial cell, Macrophage, Mesenchymal stromal cell, Mesothelial cell, Myofibroblast, Proliferating urothelial cell, Schwann cell, Unknown, Urothelial umbrella cell, Vascular smooth muscle cell
Disease
 -
Isolate
 -
Disease Stage
 -
Genotype
 -
Helath State
 -
Associated K-BDS/scDB
BioProject
 KAP200011
scDB Study
 SCS2000111
BioSample
 All samples [1]
scDB Data
 All Data [1]
KRA
 All experiments [1]
Cell Browser
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Cell Browser
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File
file 목록
File Name Size Type Published Download
SCD20000020_adata_cellType_annotated.h5ad 1,737,694,842 1,737,694,842 h5ad
SCD20000020_cell_metadata.csv 5,636,709 5,636,709 csv
SCD20000020_celltype_Basal urothelial cell_DEG_wilcoxon.csv 2,942,947 2,942,947 csv
SCD20000020_celltype_Endothelial cell_DEG_wilcoxon.csv 2,827,519 2,827,519 csv
SCD20000020_celltype_Fibroblast_DEG_wilcoxon.csv 2,665,450 2,665,450 csv
SCD20000020_celltype_Intermediate urothelial cell_DEG_wilcoxon.csv 3,142,395 3,142,395 csv
SCD20000020_celltype_Keratinocyte_DEG_wilcoxon.csv 2,726,662 2,726,662 csv
SCD20000020_celltype_Macrophage_DEG_wilcoxon.csv 2,668,581 2,668,581 csv
SCD20000020_celltype_Mesenchymal stromal cell_DEG_wilcoxon.csv 3,008,735 3,008,735 csv
SCD20000020_celltype_Mesothelial cell_DEG_wilcoxon.csv 2,819,932 2,819,932 csv
SCD20000020_celltype_Myofibroblast_DEG_wilcoxon.csv 2,699,973 2,699,973 csv
SCD20000020_celltype_Proliferating urothelial cell_DEG_wilcoxon.csv 3,137,072 3,137,072 csv
SCD20000020_celltype_Schwann cell_DEG_wilcoxon.csv 2,703,184 2,703,184 csv
SCD20000020_celltype_Unknown_DEG_wilcoxon.csv 2,603,077 2,603,077 csv
SCD20000020_celltype_Vascular smooth muscle cell_DEG_wilcoxon.csv 3,122,311 3,122,311 csv
SCD20000020_detected_gene_list.csv 183,199 183,199 csv
SCD20000020_hvg_list.csv 44,020 44,020 csv
SCD20000020_leiden_0_DEG_wilcoxon.csv 2,445,186 2,445,186 csv
SCD20000020_leiden_1_DEG_wilcoxon.csv 2,430,169 2,430,169 csv
SCD20000020_leiden_10_DEG_wilcoxon.csv 2,476,880 2,476,880 csv
SCD20000020_leiden_13_DEG_wilcoxon.csv 2,470,774 2,470,774 csv
SCD20000020_leiden_14_DEG_wilcoxon.csv 2,453,402 2,453,402 csv
SCD20000020_leiden_16_DEG_wilcoxon.csv 2,471,434 2,471,434 csv
SCD20000020_leiden_17_DEG_wilcoxon.csv 2,492,965 2,492,965 csv
SCD20000020_leiden_20_DEG_wilcoxon.csv 2,464,749 2,464,749 csv
SCD20000020_leiden_24_DEG_wilcoxon.csv 2,458,826 2,458,826 csv
SCD20000020_leiden_26_DEG_wilcoxon.csv 2,470,238 2,470,238 csv
SCD20000020_leiden_27_DEG_wilcoxon.csv 2,468,755 2,468,755 csv
SCD20000020_leiden_28_DEG_wilcoxon.csv 2,461,676 2,461,676 csv
SCD20000020_leiden_29_DEG_wilcoxon.csv 2,497,859 2,497,859 csv
SCD20000020_leiden_3_DEG_wilcoxon.csv 2,443,385 2,443,385 csv
SCD20000020_leiden_35_DEG_wilcoxon.csv 2,468,996 2,468,996 csv
SCD20000020_leiden_6_DEG_wilcoxon.csv 2,434,239 2,434,239 csv
SCD20000020_leiden_7_DEG_wilcoxon.csv 2,455,825 2,455,825 csv
SCD20000020_leiden_8_DEG_wilcoxon.csv 2,434,932 2,434,932 csv
SCD20000020_leiden_9_DEG_wilcoxon.csv 2,450,619 2,450,619 csv
SCD20000020_pca_embeddings.csv 6,442,867 6,442,867 csv
SCD20000020_raw_feature_bc_matrix.tar.gz 183,601,412 183,601,412 gz
SCD20000020_tsne_embeddings.csv 648,158 648,158 csv
SCD20000020_umap_embeddings.csv 645,265 645,265 csv
Analysis pipeline(v2025.12)