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Data wt mouse bladder
Data Information
Accession
 SCD20000010
Date and Organization
Processed date 2020-09-27
Oranization Pohang University of Science and Technology
Library Construction
 Mouse bladder and bladder assembloids were enzymatically dissociated into single cell and cells were resuspended at 1,000 cells/microliter. RNA from was extracted using the 10x Genomics Chromium Single Cell 3? Reagent Kits v3 following the manufacturer?_ instructions. Dissociated single cell suspension was loaded on Chromium Single Cell Chips. We constructed single-cell RNA-seq libraries using the 10x Genomics Chromium Single Cell 3? Reagent Kits v3.
Conditions
Species
Scientific Name Mus musculus
Taxonomy ID 10090
Tissue
 Urinary bladder
Treatment
 -
Sex
 Male
Cell Line
 -
Age
 8-9 weeks
Cell Type
 -
Development Stage
 -
Cell Subtype
 Basal urothelial cell, Endothelial cell, Erythrocyte, Fibroblast, Intermediate urothelial cell, Lymphatic endothelial cell, Macrophage, Mesothelial cell, Myeloid cell, Myofibroblast, Neuron, Pericyte, Proliferating urothelial cell, Schwann cell, Smooth muscle cell, Unknown, Urothelial cell, Urothelial umbrella cell
Disease
 -
Isolate
 -
Disease Stage
 -
Genotype
 -
Helath State
 -
Associated K-BDS/scDB
BioProject
 KAP200011
scDB Study
 SCS2000111
BioSample
 All samples [1]
scDB Data
 All Data [1]
KRA
 All experiments [1]
Cell Browser
Cell Browse
Cell Browser
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Scatter plot
File
file 목록
File Name Size Type Published Download
SCD20000010_adata_cellType_annotated.h5ad 1,304,782,486 1,304,782,486 h5ad
SCD20000010_cell_metadata.csv 3,944,550 3,944,550 csv
SCD20000010_celltype_Basal urothelial cell_DEG_wilcoxon.csv 3,011,379 3,011,379 csv
SCD20000010_celltype_Endothelial cell_DEG_wilcoxon.csv 2,861,901 2,861,901 csv
SCD20000010_celltype_Erythrocyte_DEG_wilcoxon.csv 2,751,629 2,751,629 csv
SCD20000010_celltype_Fibroblast_DEG_wilcoxon.csv 2,711,330 2,711,330 csv
SCD20000010_celltype_Intermediate urothelial cell_DEG_wilcoxon.csv 3,177,935 3,177,935 csv
SCD20000010_celltype_Lymphatic endothelial cell_DEG_wilcoxon.csv 3,123,029 3,123,029 csv
SCD20000010_celltype_Mesothelial cell_DEG_wilcoxon.csv 2,877,341 2,877,341 csv
SCD20000010_celltype_Myeloid cell_DEG_wilcoxon.csv 2,782,002 2,782,002 csv
SCD20000010_celltype_Myofibroblast_DEG_wilcoxon.csv 2,804,557 2,804,557 csv
SCD20000010_celltype_Neuron_DEG_wilcoxon.csv 2,634,424 2,634,424 csv
SCD20000010_celltype_Pericyte_DEG_wilcoxon.csv 2,665,906 2,665,906 csv
SCD20000010_celltype_Proliferating urothelial cell_DEG_wilcoxon.csv 3,211,357 3,211,357 csv
SCD20000010_celltype_Schwann cell_DEG_wilcoxon.csv 2,771,838 2,771,838 csv
SCD20000010_celltype_Smooth muscle cell_DEG_wilcoxon.csv 2,904,442 2,904,442 csv
SCD20000010_celltype_Unknown_DEG_wilcoxon.csv 2,650,436 2,650,436 csv
SCD20000010_celltype_Urothelial cell_DEG_wilcoxon.csv 2,849,305 2,849,305 csv
SCD20000010_celltype_Urothelial umbrella cell_DEG_wilcoxon.csv 3,053,700 3,053,700 csv
SCD20000010_detected_gene_list.csv 186,751 186,751 csv
SCD20000010_hvg_list.csv 43,166 43,166 csv
SCD20000010_leiden_0_DEG_wilcoxon.csv 2,499,047 2,499,047 csv
SCD20000010_leiden_11_DEG_wilcoxon.csv 2,501,309 2,501,309 csv
SCD20000010_leiden_12_DEG_wilcoxon.csv 2,525,458 2,525,458 csv
SCD20000010_leiden_15_DEG_wilcoxon.csv 2,513,150 2,513,150 csv
SCD20000010_leiden_17_DEG_wilcoxon.csv 2,522,789 2,522,789 csv
SCD20000010_leiden_18_DEG_wilcoxon.csv 2,520,701 2,520,701 csv
SCD20000010_leiden_19_DEG_wilcoxon.csv 2,518,702 2,518,702 csv
SCD20000010_leiden_2_DEG_wilcoxon.csv 2,468,141 2,468,141 csv
SCD20000010_leiden_21_DEG_wilcoxon.csv 2,529,914 2,529,914 csv
SCD20000010_leiden_22_DEG_wilcoxon.csv 2,512,011 2,512,011 csv
SCD20000010_leiden_23_DEG_wilcoxon.csv 2,522,496 2,522,496 csv
SCD20000010_leiden_25_DEG_wilcoxon.csv 2,527,410 2,527,410 csv
SCD20000010_leiden_30_DEG_wilcoxon.csv 2,532,992 2,532,992 csv
SCD20000010_leiden_31_DEG_wilcoxon.csv 2,518,336 2,518,336 csv
SCD20000010_leiden_32_DEG_wilcoxon.csv 2,520,913 2,520,913 csv
SCD20000010_leiden_33_DEG_wilcoxon.csv 2,516,686 2,516,686 csv
SCD20000010_leiden_34_DEG_wilcoxon.csv 2,483,438 2,483,438 csv
SCD20000010_leiden_36_DEG_wilcoxon.csv 2,527,656 2,527,656 csv
SCD20000010_leiden_37_DEG_wilcoxon.csv 2,517,483 2,517,483 csv
SCD20000010_leiden_4_DEG_wilcoxon.csv 2,480,229 2,480,229 csv
SCD20000010_leiden_5_DEG_wilcoxon.csv 2,490,494 2,490,494 csv
SCD20000010_leiden_8_DEG_wilcoxon.csv 2,498,559 2,498,559 csv
SCD20000010_leiden_9_DEG_wilcoxon.csv 2,497,680 2,497,680 csv
SCD20000010_pca_embeddings.csv 4,947,543 4,947,543 csv
SCD20000010_raw_feature_bc_matrix.tar.gz 133,574,925 133,574,925 gz
SCD20000010_tsne_embeddings.csv 493,410 493,410 csv
SCD20000010_umap_embeddings.csv 492,602 492,602 csv
Analysis pipeline(v2025.12)