Array-based functional genomics data
KSE100102
Title
DNA methylome in MZ twin
Study
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Title
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DNA methylome in MZ twin |
|---|---|
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Summary
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Bisulphite converted DNA from the 94 samples were hybridised to the Illumina Infinium 850k Human Methylation Beadchip
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Experimental design
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reference design
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Experimental type
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methylation profiling by array
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Organism
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Homo sapiens |
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Source name
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Blood |
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Contributor(s)
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- |
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Submission type
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Complete |
Protocols
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Accession
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Type
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Description
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|---|---|---|
| KSP10000022 | Nucleic acid labeling protocol |
Standard Illumina Protocol
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| KSP10000023 | Nucleic acid hybridization to array protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
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| KSP10000024 | Array scanning and feature extraction protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
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| KSP10000020 | Sample collection protocol |
missing
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| KSP10000021 | Nucleic acid extraction protocol |
genomic DNA was extracted and purified from blood samples using Qiagen DNeasy Kit according to standard instructions
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| KSP10000025 | Normalization data transformation protocol |
For DNA methylome data analysis, CpG methylation values were calculated as average-b values using the minfi package (version 1.26.2) of R software, and we used the subset-quantile within array normalization (SWAN) to reduce technical variations within and between arrays.
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Detailed Experiment information
Toggle table
Accession
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BioSamples
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|---|---|
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BioProject
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KAP240383 |
| File Name | Sample IDS | Size | Format | File type | Release date | Download | |
|---|---|---|---|---|---|---|---|
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206390540091_R03C01_Grn.idat
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13,677,890 13,677,890 | idat |
Raw data file
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2023-02-28 | |||
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206390540091_R03C01_Red.idat
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13,677,890 13,677,890 | idat |
Raw data file
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2023-02-28 | |||
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microarray_meth_value.txt
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1,174,617,103 1,174,617,103 | txt |
Epigenomic analysis file
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2023-02-28 |