KNA legacy(~2024)
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AccessionKNA1000001064
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Submission date2024-11-01
Project Detail
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BioProject
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KAP240983 |
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Project title
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Chromosome level genome assembly and annotation of Nicotiana benthamiana
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Project description
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Chromosome level genome assembly and annotation of Nicotiana benthamiana using ONT sequencing platform
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Name of submitter
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Shin Ah Young
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DataSet
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Assemble type
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Assembled sequences (each sequence was assembled from two or more overlapping sequence reads)
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Submission type
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Whole genome sequences
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Assembly date
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Assembly method
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Other (Please specify) - NextDenovo v.2.5.0
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Program version
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2.5.0
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Assembly name
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Genome coverage
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55 x
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Total raw read length
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153712868536
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Read throughput
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9000040
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The number of contigs
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667
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Contig length
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2791887191
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N50
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142632486 bp
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Sequencing technology
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Oxford Nanopore PromethION
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Confirm full genome
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Yes (even for draft genomes or if a prokaryotic genome assembly may not include plasmids)
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Description for subset of the genome
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Confirm final version
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Yes
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Confirm de novo assembly
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Yes
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Reference assembly name or accession
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Confirm update of existing submission
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No
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Existing genome accession
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Molecule Type
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Topology
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Source Organelle/Location information
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Chimera check
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Chimera check program name
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Chimera check program version
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Cultured or Uncultured
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Primer Type
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Forward primer name
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Forward primer sequence
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Reverse primer name
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Reverse primer sequence
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Coding region (CDS) / Gene / mRNA
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RNA
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Repeat sequence / mobile element / satellites
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Regulatory feature
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Others
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Reference file
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Release date
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Assembly state
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Confirm AGP file for unplaced scaffolds
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Confirm AGP file for unlocalized scaffolds
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How to assemble using AGP
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Confirm annotation in AGP
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Sequence file format
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FASTA
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Release date
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2024-11-01
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| File Name | Size | Type | Published | Download | |
|---|---|---|---|---|---|
| Nb_KLAB_exceptN.fasta | 2,838,430,636 2,838,430,636 | fasta | 2024-11-01 | ||
| Nb_KLAB.gff3 | 58,536,289 58,536,289 | gff3 | 2024-11-01 |