KNA legacy(~2024)
-
-
AccessionKNA1000000919
-
Submission date2024-04-05
Project Detail
|
BioProject
|
KAP240686 |
|---|---|
|
Project title
|
Chromosome Y sequencing
|
|
Project description
|
Analyzing the genes of avian influenza viruses isolated at home and abroad
|
|
Name of submitter
|
PARK HYUN
|
DataSet
|
Assemble type
|
Assembled sequences (each sequence was assembled from two or more overlapping sequence reads)
|
|---|---|
|
Submission type
|
Whole genome sequences
|
|
Assembly date
|
|
|
Assembly method
|
GS De Novo Assembler
|
|
Program version
|
V2.8
|
|
Assembly name
|
|
|
Genome coverage
|
257799.28 x
|
|
Total raw read length
|
3454510352
|
|
Read throughput
|
22877552
|
|
The number of contigs
|
8
|
|
Contig length
|
13400
|
|
N50
|
2176 bp
|
|
Sequencing technology
|
Illumina
|
|
Confirm full genome
|
Yes (even for draft genomes or if a prokaryotic genome assembly may not include plasmids)
|
|
Description for subset of the genome
|
|
|
Confirm final version
|
Yes
|
|
Confirm de novo assembly
|
No
|
|
Reference assembly name or accession
|
A/Duck/Jiangsu/JS1018/2019(H3)
A/mallard duck/Georgia/3/2012(H7N3)
A/duck/Bangladesh/38305/2019(H11N3)
A/mallard/Alaska/AK18-WB1-048B/2018(H3N8)
A/pintail/Egypt/MB-D-384C/2015(H3N6)
A/duck/Assam/DUOR1512100028/2015(H3N8)
A/Arenaria interpres/Belgium/11446/2016(H6N8)
A/duck/Bangladesh/37473/2019(H8N4)
|
|
Confirm update of existing submission
|
No
|
|
Existing genome accession
|
|
|
Molecule Type
|
|
|
Topology
|
|
|
Source Organelle/Location information
|
|
|
Chimera check
|
|
|
Chimera check program name
|
|
|
Chimera check program version
|
|
|
Cultured or Uncultured
|
|
|
Primer Type
|
|
|
Forward primer name
|
|
|
Forward primer sequence
|
|
|
Reverse primer name
|
|
|
Reverse primer sequence
|
|
|
Coding region (CDS) / Gene / mRNA
|
|
|
RNA
|
|
|
Repeat sequence / mobile element / satellites
|
|
|
Regulatory feature
|
|
|
Others
|
|
|
Reference file
|
|
|
Release date
|
|
|
Assembly state
|
|
|
Confirm AGP file for unplaced scaffolds
|
|
|
Confirm AGP file for unlocalized scaffolds
|
|
|
How to assemble using AGP
|
|
|
Confirm annotation in AGP
|
|
|
Sequence file format
|
FASTA
|
|
Release date
|
2024-03-22
|
| File Name | Size | Type | Published | Download | |
|---|---|---|---|---|---|
| A_Duck_Doitlake_38_2022_H3N8.fasta | 14,622 14,622 | fasta | 2024-03-22 |