KNA legacy(~2024)
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AccessionKNA1000000638
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Submission date2024-02-15
Project Detail
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BioProject
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KAP240612 |
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Project title
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Standard cooperation center for quality control of mouse microbes
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Project description
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Through the provision of standardized mouse microbiome materials, we contribute substantively to the advancement of diagnostic kits for mouse health monitoring. This endeavor aims to optimize quality control in bioscience by harnessing health monitoring information services, thereby enhancing the precision and reliability of experimental outcomes. The active support for mouse health monitoring not only acts as a preemptive measure against infectious diseases in experimental animals but also serves to safeguard invaluable lives. Additionally, it significantly mitigates the temporal and economic losses associated with repetitive experiments. Ultimately, these efforts contribute to the fortification of competitiveness within the bioscience domain.
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Name of submitter
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Choi Yang-Kyu
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DataSet
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Assemble type
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Assembled sequences (each sequence was assembled from two or more overlapping sequence reads)
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Submission type
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Whole genome sequences
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Assembly date
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Assembly method
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Other (Please specify) - Trycycler
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Program version
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v0.5.3
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Assembly name
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Genome coverage
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749.029296414696 x
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Total raw read length
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1948251416
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Read throughput
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257580
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The number of contigs
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1
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Contig length
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2601035
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N50
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2601035 bp
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Sequencing technology
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Oxford Nanopore MinION
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Confirm full genome
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Yes (even for draft genomes or if a prokaryotic genome assembly may not include plasmids)
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Description for subset of the genome
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Confirm final version
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Yes
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Confirm de novo assembly
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Yes
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Reference assembly name or accession
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Confirm update of existing submission
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No
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Existing genome accession
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Molecule Type
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Topology
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Source Organelle/Location information
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Chimera check
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Chimera check program name
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Chimera check program version
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Cultured or Uncultured
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Primer Type
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Forward primer name
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Forward primer sequence
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Reverse primer name
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Reverse primer sequence
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Coding region (CDS) / Gene / mRNA
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RNA
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Repeat sequence / mobile element / satellites
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Regulatory feature
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Others
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Reference file
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Release date
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Assembly state
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Confirm AGP file for unplaced scaffolds
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Confirm AGP file for unlocalized scaffolds
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How to assemble using AGP
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Confirm annotation in AGP
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Sequence file format
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FASTA
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Release date
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2024-05-16
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| File Name | Size | Type | Published | Download | |
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| Cbovis2.fasta | 2,644,409 2,644,409 | fasta | 2024-05-16 | ||
| Cbovis2.gff | 3,158,104 3,158,104 | gff | 2024-05-16 |