KNA: Browse

유전체

Wickerhamomyces ciferrii TAPS overproducing industrial strain Wickerhamomyces ciferrii LCS, Contig level genome assembly

Accession

KAAAAHB01
Submission date

2025-02-26

Project Detail

BioProject detail - BioProject ID, projectTitle, projectDescription, keywords, nameOfSubmitter
BioProject	KAP241466
프로젝트의 영문 제목	Development and commercialization of microbial-based sphingosine novel material technology
프로젝트의 영문 설명	Development of overproduction strains for sphinganine and sphingosine, novel sphingoid materials, using microbial synthetic biology
등록자의 영문 이름	Kang Hyun Ah

BioSample


BioSample Accession ID	KAS24111421
BioSample name	TAPS overproducing industrial strain Wickerhamomyces ciferrii LCS
Organism	Wickerhamomyces ciferrii
NCBItaxonomyID	1041607
Strain	LCS
Breed
Cultivar
Isolate	-
Ecotype
Host	-
Lab Host
Isolation Source	-
Sample Division	Plants and Fungi

DataSet

메타데이터 입력

Name of submitter's organization

Chung-Ang University

Department of submitter

Department of Life Science

Country of submitter

Republic of Korea

Street address

84 Heukseok-ro

City

Dongjak-gu

State / Province / Region

Seoul

Zip Code (Postal Code)

6974

Contact person information

Name	Kang, Hyun Ah
Email	hyunkang@cau.ac.kr
Phone

Publication status

Unpublished

Publication

PubMed ID of publication
DOI of publication
Reference Title
Authors
Journal Title
Journal Year
Journal Volume
Journal Issue
Journal Pages
Publication

Reference title

Confirm update of existing submission

Existing KNA Accession ID

Sequence Authors

Sequence authors full name	Hyun Ah Kang
Sequence authors initials	Hyun Ah Kang

Sample processing protocol

Data processing protocol

Supplementary information

Release Protocol?

Confirm full genome

Yes (even for draft genomes or if a prokaryotic genome assembly may not incude plasmids)

Description for subset of the genome

Assembly state

One or more chromosomes are still in multiple pieces and/or some sequences are not assembled into chromosomes

Assembly level

Contig

Confirm de novo assembly

Yes

Reference assembly accession ID

Confirm final version

Locus Tag Prefix

Reference assembly accession

NCBI Accession
KNA DATA ID

Did you submit KRA data for this Genome submission?

KRA Accession ID

Assembly date

Sequencing platform - KRA Run

KRA Run ID
Platform
Instrument model
Genome coverage

Sequencing platform

1	NCBI SRA Run ID
	Platform	ILLUMINA
	Instrument model	Illumina HiSeq 2500
	Genome coverage	201

2	NCBI SRA Run ID
	Platform	PACBIO_SMRT
	Instrument model	Sequel
	Genome coverage	293

Sequencing platform

NCBI SRA Run ID
Platform
Instrument model
Genome coverage

Assembly method

1	Program	Other (Please specify) - Canu
1	Program version or Run date	v2.2

2	Program	Other (Please specify) - Pilon
2	Program version or Run date	v1.22

Haplotype phasing method

Assembly name

hasN

Did you randomly merge the sequences into a single sequence?

Do any of the N's represents gaps of completely unknown size gaps?

Appropriate minimum number of Ns in a row (0-10) that represents a gap

Representataion of Unknown Gaps

What type of evidence was used to assert linkage across the assembly gaps?

Annotation file format

Total length

29541462

Total contigs

Scaffolds or chromosomes Total length

Scaffolds or chromosomes Total contigs

Sequences belong to?

Chromosome

Sequence ID
Length
GC%
Chromosome name
Haplotype number
Topology
Confirm complete chromosome

Organelle

Sequence ID
Length
GC%
Organelle information
Organelle name
Topology
Status

Plasmid

Sequence ID
Length
GC%
Plasmid name
Topology
Status

Nucleotide Accession

file 목록
file 선택	File Name	Size	Type	Published	Download
file 선택	Wcif_LCS_chromosome.fasta	30,034,441 30,034,441	fasta	2025-05-28

Contigs

Showing 1-10 of 15

variant call list
Accession	Title	Sequence Id	GC%	Length
KAAAAHB010000001	Wickerhamomyces ciferrii TAPS overproducing industrial strain Wickerhamomyces ciferrii LCS, Wickerhamomyces ciferrii Wickerhamomyces_ciferrii_01_len=4635894	Wickerhamomyces_ciferrii_01_len=4635894	30.67%	4,635,894 bp
KAAAAHB010000002	Wickerhamomyces ciferrii TAPS overproducing industrial strain Wickerhamomyces ciferrii LCS, Wickerhamomyces ciferrii Wickerhamomyces_ciferrii_02_len=2522842	Wickerhamomyces_ciferrii_02_len=2522842	30.64%	2,522,842 bp
KAAAAHB010000003	Wickerhamomyces ciferrii TAPS overproducing industrial strain Wickerhamomyces ciferrii LCS, Wickerhamomyces ciferrii Wickerhamomyces_ciferrii_03_len=2421998	Wickerhamomyces_ciferrii_03_len=2421998	30.50%	2,421,998 bp
KAAAAHB010000004	Wickerhamomyces ciferrii TAPS overproducing industrial strain Wickerhamomyces ciferrii LCS, Wickerhamomyces ciferrii Wickerhamomyces_ciferrii_04_len=1719708	Wickerhamomyces_ciferrii_04_len=1719708	30.26%	1,719,708 bp
KAAAAHB010000005	Wickerhamomyces ciferrii TAPS overproducing industrial strain Wickerhamomyces ciferrii LCS, Wickerhamomyces ciferrii Wickerhamomyces_ciferrii_05_len=1657048	Wickerhamomyces_ciferrii_05_len=1657048	30.60%	1,657,048 bp
KAAAAHB010000006	Wickerhamomyces ciferrii TAPS overproducing industrial strain Wickerhamomyces ciferrii LCS, Wickerhamomyces ciferrii Wickerhamomyces_ciferrii_06_len=1732801	Wickerhamomyces_ciferrii_06_len=1732801	30.38%	1,732,801 bp
KAAAAHB010000007	Wickerhamomyces ciferrii TAPS overproducing industrial strain Wickerhamomyces ciferrii LCS, Wickerhamomyces ciferrii Wickerhamomyces_ciferrii_07_len=1699051	Wickerhamomyces_ciferrii_07_len=1699051	30.58%	1,699,051 bp
KAAAAHB010000008	Wickerhamomyces ciferrii TAPS overproducing industrial strain Wickerhamomyces ciferrii LCS, Wickerhamomyces ciferrii Wickerhamomyces_ciferrii_08_len=1218147	Wickerhamomyces_ciferrii_08_len=1218147	30.18%	1,218,147 bp
KAAAAHB010000009	Wickerhamomyces ciferrii TAPS overproducing industrial strain Wickerhamomyces ciferrii LCS, Wickerhamomyces ciferrii Wickerhamomyces_ciferrii_09_len=1565004	Wickerhamomyces_ciferrii_09_len=1565004	30.54%	1,565,004 bp
KAAAAHB010000010	Wickerhamomyces ciferrii TAPS overproducing industrial strain Wickerhamomyces ciferrii LCS, Wickerhamomyces ciferrii Wickerhamomyces_ciferrii_10_len=1450350	Wickerhamomyces_ciferrii_10_len=1450350	30.30%	1,450,350 bp

1 2