유전체
Bacillus badius 3739T, Contig level genome assembly
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AccessionKAAAAFL01
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Submission date2025-03-11
Project Detail
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BioProject
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KAP241475 |
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프로젝트의 영문 제목
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Genome sequence assemblies of microbial strains collected by Korean Collection for Type Cultures (KCTC)
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프로젝트의 영문 설명
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The genome sequence assembly results using the Illumina HiSeq 2000 sequencing data of the microorganisms (BioProject KAP241464). The methods for data QC, assembly, and annotation are identical to those of BioProject KAP241424, so please refer to the README file of that BioProject.
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등록자의 영문 이름
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Jeong Haeyoung
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BioSample
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BioSample Accession ID
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KAS24112002 |
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BioSample name
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3739T
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Organism
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Bacillus badius
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NCBItaxonomyID
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1455
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Strain
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KCTC 3739
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Breed
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Cultivar
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Isolate
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Ecotype
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Host
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Lab Host
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Isolation Source
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Not applicable
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Sample Division
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Bacteria
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DataSet
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Name of submitter's organization
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Korea Research Institute of Bioscience and Biotechnology
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Department of submitter
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Korea Bioinformation Center (KOBIC)
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Country of submitter
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Republic of Korea
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Street address
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83 Gwahak-ro
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City
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Yuseong-gu
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State / Province / Region
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Daejeon
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Zip Code (Postal Code)
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34099
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Contact person information
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Publication status
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Unpublished
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Publication
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Reference title
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Confirm update of existing submission
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No
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Existing KNA Accession ID
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Sequence Authors
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Sample processing protocol
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Data processing protocol
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Supplementary information
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Release Protocol?
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No
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Confirm full genome
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Yes (even for draft genomes or if a prokaryotic genome assembly may not incude plasmids)
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Description for subset of the genome
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Assembly state
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One or more chromosomes are still in multiple pieces and/or some sequences are not assembled into chromosomes
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Assembly level
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Contig
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Confirm de novo assembly
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Yes
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Reference assembly accession ID
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Confirm final version
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Yes
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Locus Tag Prefix
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Reference assembly accession
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Did you submit KRA data for this Genome submission?
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Yes
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KRA Accession ID
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Assembly date
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Sequencing platform - KRA Run
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Sequencing platform
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Sequencing platform
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Assembly method
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Haplotype phasing method
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Assembly name
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hasN
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No
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Did you randomly merge the sequences into a single sequence?
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No
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Do any of the N's represents gaps of completely unknown size gaps?
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Appropriate minimum number of Ns in a row (0-10) that represents a gap
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Representataion of Unknown Gaps
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What type of evidence was used to assert linkage across the assembly gaps?
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Annotation file format
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GFF
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Total length
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4021307
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Total contigs
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115
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Scaffolds or chromosomes Total length
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0
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Scaffolds or chromosomes Total contigs
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0
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Sequences belong to?
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Chromosome
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Organelle
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Plasmid
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Nucleotide Accession
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| File Name | Size | Type | Published | Download | |
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| 3739T.fasta | 4,091,675 4,091,675 | fasta | 2025-03-10 | ||
| 3739T.gff | 7,215,240 7,215,240 | gff | 2025-03-10 |
Contigs
Showing 1-10 of 115
| Accession | Title | Sequence Id | GC% | Length |
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| KAAAAFL010000001 |
Bacillus badius 3739T, Bacillus badius 1 length=616820 depth=0.95x
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1 length=616820 depth=0.95x
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43.79% | 616,820 bp |
| KAAAAFL010000002 |
Bacillus badius 3739T, Bacillus badius 2 length=413906 depth=1.37x
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2 length=413906 depth=1.37x
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46.15% | 413,906 bp |
| KAAAAFL010000003 |
Bacillus badius 3739T, Bacillus badius 3 length=390166 depth=0.89x
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3 length=390166 depth=0.89x
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44.26% | 390,166 bp |
| KAAAAFL010000004 |
Bacillus badius 3739T, Bacillus badius 4 length=317846 depth=0.76x
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4 length=317846 depth=0.76x
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43.65% | 317,846 bp |
| KAAAAFL010000005 |
Bacillus badius 3739T, Bacillus badius 5 length=315381 depth=1.18x
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5 length=315381 depth=1.18x
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44.82% | 315,381 bp |
| KAAAAFL010000006 |
Bacillus badius 3739T, Bacillus badius 6 length=178621 depth=1.38x
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6 length=178621 depth=1.38x
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44.69% | 178,621 bp |
| KAAAAFL010000007 |
Bacillus badius 3739T, Bacillus badius 7 length=171533 depth=1.00x
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7 length=171533 depth=1.00x
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45.27% | 171,533 bp |
| KAAAAFL010000008 |
Bacillus badius 3739T, Bacillus badius 8 length=123786 depth=1.12x
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8 length=123786 depth=1.12x
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44.40% | 123,786 bp |
| KAAAAFL010000009 |
Bacillus badius 3739T, Bacillus badius 9 length=123671 depth=1.24x
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9 length=123671 depth=1.24x
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46.16% | 123,671 bp |
| KAAAAFL010000010 |
Bacillus badius 3739T, Bacillus badius 10 length=121803 depth=1.14x
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10 length=121803 depth=1.14x
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43.91% | 121,803 bp |