유전체
Thermoactinomyces vulgaris 9076T, Contig level genome assembly
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AccessionKAAAAFE01
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Submission date2025-03-11
Project Detail
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BioProject
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KAP241475 |
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프로젝트의 영문 제목
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Genome sequence assemblies of microbial strains collected by Korean Collection for Type Cultures (KCTC)
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프로젝트의 영문 설명
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The genome sequence assembly results using the Illumina HiSeq 2000 sequencing data of the microorganisms (BioProject KAP241464). The methods for data QC, assembly, and annotation are identical to those of BioProject KAP241424, so please refer to the README file of that BioProject.
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등록자의 영문 이름
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Jeong Haeyoung
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BioSample
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BioSample Accession ID
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KAS24111995 |
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BioSample name
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9076T
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Organism
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Thermoactinomyces vulgaris
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NCBItaxonomyID
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2054
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Strain
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KCTC 9076
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Breed
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Cultivar
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Isolate
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Ecotype
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Host
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Lab Host
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Isolation Source
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compost
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Sample Division
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Bacteria
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DataSet
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Name of submitter's organization
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Korea Research Institute of Bioscience and Biotechnology
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Department of submitter
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Korea Bioinformation Center (KOBIC)
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Country of submitter
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Republic of Korea
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Street address
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76 Gwahak-ro
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City
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Yuseong-gu
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State / Province / Region
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Daejeon
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Zip Code (Postal Code)
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34092
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Contact person information
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Publication status
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Unpublished
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Publication
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Reference title
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Confirm update of existing submission
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No
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Existing KNA Accession ID
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Sequence Authors
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Sample processing protocol
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Data processing protocol
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Supplementary information
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Release Protocol?
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No
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Confirm full genome
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Yes (even for draft genomes or if a prokaryotic genome assembly may not incude plasmids)
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Description for subset of the genome
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Assembly state
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One or more chromosomes are still in multiple pieces and/or some sequences are not assembled into chromosomes
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Assembly level
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Contig
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Confirm de novo assembly
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Yes
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Reference assembly accession ID
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Confirm final version
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Yes
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Locus Tag Prefix
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Reference assembly accession
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Did you submit KRA data for this Genome submission?
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Yes
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KRA Accession ID
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Assembly date
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Sequencing platform - KRA Run
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Sequencing platform
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Sequencing platform
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Assembly method
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Haplotype phasing method
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Assembly name
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hasN
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No
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Did you randomly merge the sequences into a single sequence?
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No
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Do any of the N's represents gaps of completely unknown size gaps?
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Appropriate minimum number of Ns in a row (0-10) that represents a gap
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Representataion of Unknown Gaps
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What type of evidence was used to assert linkage across the assembly gaps?
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Annotation file format
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GFF
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Total length
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2558319
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Total contigs
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40
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Scaffolds or chromosomes Total length
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0
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Scaffolds or chromosomes Total contigs
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0
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Sequences belong to?
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Chromosome
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Organelle
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Plasmid
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Nucleotide Accession
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| File Name | Size | Type | Published | Download | |
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| 9076T.fasta | 2,602,092 2,602,092 | fasta | 2025-03-10 | ||
| 9076T.gff | 4,653,852 4,653,852 | gff | 2025-03-10 |
Contigs
Showing 1-10 of 40
| Accession | Title | Sequence Id | GC% | Length |
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| KAAAAFE010000001 |
Thermoactinomyces vulgaris 9076T, Thermoactinomyces vulgaris 1 length=516280 depth=0.94x
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1 length=516280 depth=0.94x
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47.25% | 516,280 bp |
| KAAAAFE010000002 |
Thermoactinomyces vulgaris 9076T, Thermoactinomyces vulgaris 2 length=497698 depth=0.95x
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2 length=497698 depth=0.95x
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48.64% | 497,698 bp |
| KAAAAFE010000003 |
Thermoactinomyces vulgaris 9076T, Thermoactinomyces vulgaris 3 length=444808 depth=1.18x
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3 length=444808 depth=1.18x
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47.96% | 444,808 bp |
| KAAAAFE010000004 |
Thermoactinomyces vulgaris 9076T, Thermoactinomyces vulgaris 4 length=227215 depth=1.03x
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4 length=227215 depth=1.03x
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47.42% | 227,215 bp |
| KAAAAFE010000005 |
Thermoactinomyces vulgaris 9076T, Thermoactinomyces vulgaris 5 length=189332 depth=1.09x
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5 length=189332 depth=1.09x
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48.00% | 189,332 bp |
| KAAAAFE010000006 |
Thermoactinomyces vulgaris 9076T, Thermoactinomyces vulgaris 6 length=135370 depth=0.83x
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6 length=135370 depth=0.83x
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48.46% | 135,370 bp |
| KAAAAFE010000007 |
Thermoactinomyces vulgaris 9076T, Thermoactinomyces vulgaris 7 length=132579 depth=1.15x
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7 length=132579 depth=1.15x
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48.49% | 132,579 bp |
| KAAAAFE010000008 |
Thermoactinomyces vulgaris 9076T, Thermoactinomyces vulgaris 8 length=102105 depth=1.03x
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8 length=102105 depth=1.03x
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49.44% | 102,105 bp |
| KAAAAFE010000009 |
Thermoactinomyces vulgaris 9076T, Thermoactinomyces vulgaris 9 length=69334 depth=1.15x
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9 length=69334 depth=1.15x
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48.33% | 69,334 bp |
| KAAAAFE010000010 |
Thermoactinomyces vulgaris 9076T, Thermoactinomyces vulgaris 10 length=63598 depth=1.00x
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10 length=63598 depth=1.00x
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49.58% | 63,598 bp |